RLG00000035915

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001695
Physical Location & Seq
Forward (+)
73323280 .. 73326731
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035915

Sequence Viewer

Length: 699 bp
ATGGAGCTTTCTTTAGGCTTCGGTCTCGTCTTGTTTGCCTTCGTTGTGGTCGTGGACATAGTGTGTGTTGAGGGGAATCTTGGTCCTAGTGTTGCTTTATTAGAGAGCCAAGAGAGTGTTGGGGCGGCAGTGAAGGGTGGTAGAGGCTGTCGGGTGGAGTGGGATCCGAGCGGTATGGGATCCGGATCATTGCAGCAGCCTGTGTCAGGCTTGGTGGCTGCGAGAGCGGGGATTAGTGGTTGTCAGTTTGCTTCTTCGGCGGCCGAGGATGATGAGATCAGAGGCGTATCCAGTCCTTCGTCGATGGCGGAGGTCATTGAAGGCGGACTGAGATTAGGTTTTGACGATGGTGGTAGAGTCCATCTTATTGGTGGTGGAAGGTGGGATCCGAGAGGGTCGGATCTCTTGCCTTTCTTTCATGGTCGTCTCAAAGGGCCGACTAATCTCGGTGAGGATGGTGGCAGTTCGTGTGTGCTGTCGTCGATCAAAGTGGGTTTTAGCCGGCCAGATCACCTGACGATGCTACTACTAGAGTGTGGGTTCGCTGCTTGTGATGTCGACTTCTTCTTGACAATTGATGACCTCCGTCGACGGAGTAGTACAGACAATGTTGCAGGCGACAGGCCACCGGGTAGTTTGGTGGACAAATGGTACATCGGCGAAGGAAGGTGGAGTGGTGGCTGTGGAGGAAGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

24.18

Weight (kDa)

4.81

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 171, 227
AccI GTMKAC 2 cut(s) 558, 589
AccIII TCCGGA 1 cut(s) 182
AciI CCGC 6 cut(s) 125, 171, 227, 260, 308, 324
AclWI GGATC 8 cut(s) 158, 171, 174, 187, 193, 380, 393, 408
AcoI YGGCCR 2 cut(s) 261, 503
AfaI GTAC 2 cut(s) 601, 653
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 320
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw26I GTCTC 2 cut(s) 29, 431
AlwI GGATC 8 cut(s) 158, 171, 174, 187, 193, 380, 393, 408
Aor13HI TCCGGA 1 cut(s) 182
AoxI GGCC 4 cut(s) 261, 434, 503, 623
ApeKI GCWGC 4 cut(s) 193, 196, 218, 545
AspS9I GGNCC 2 cut(s) 83, 434
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 461, 503
AvaII GGWCC 1 cut(s) 83
BamHI GGATCC 3 cut(s) 163, 179, 385
BbvI GCAGC 4 cut(s) 205, 205, 208, 532
BccI CCATC 4 cut(s) 298, 341, 369, 449
BciVI GTATCC 1 cut(s) 298
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 29, 431
BfaI CTAG 2 cut(s) 87, 530
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 6 cut(s) 126, 194, 197, 219, 261, 546
BlsI GCNGC 6 cut(s) 127, 195, 198, 220, 262, 547
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 83, 434
BmiI GGNNCC 3 cut(s) 165, 181, 387
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 1 cut(s) 510
BoxI GACNNNNGTC 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 184
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 274, 460
BseJI GATNNNNATC 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 291
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 4 cut(s) 205, 205, 208, 532
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 4 cut(s) 263, 436, 505, 625
BsiEI CGRYCG 1 cut(s) 264
BsiSI CCGG 3 cut(s) 183, 502, 629
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 2 cut(s) 29, 431
BsmBI CGTCTC 1 cut(s) 431
BsnI GGCC 4 cut(s) 263, 436, 505, 625
Bso31I GGTCTC 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 182
Bsp143I GATC 8 cut(s) 163, 179, 185, 276, 385, 400, 483, 508
BspACI CCGC 6 cut(s) 125, 171, 227, 260, 308, 324
BspANI GGCC 4 cut(s) 263, 436, 505, 625
BspCNI CTCAG 1 cut(s) 321
BspEI TCCGGA 1 cut(s) 182
BspLI GGNNCC 3 cut(s) 165, 181, 387
BspPI GGATC 8 cut(s) 158, 171, 174, 187, 193, 380, 393, 408
BspTNI GGTCTC 1 cut(s) 29
BsrBI CCGCTC 2 cut(s) 171, 227
BsrDI GCAATG 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 501
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 501
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 8 cut(s) 163, 179, 185, 276, 385, 400, 483, 508
BstC8I GCNNGC 2 cut(s) 503, 616
BstDEI CTNAG 1 cut(s) 329
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 274, 460
BstKTI GATC 8 cut(s) 166, 182, 188, 279, 388, 403, 486, 511
BstMAI GTCTC 2 cut(s) 29, 431
BstMBI GATC 8 cut(s) 163, 179, 185, 276, 385, 400, 483, 508
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 224, 257
BstPAI GACNNNNGTC 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 628
BstV1I GCAGC 4 cut(s) 205, 205, 208, 532
BstX2I RGATCY 4 cut(s) 163, 179, 385, 400
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 4 cut(s) 163, 179, 385, 400
BstZI CGGCCG 1 cut(s) 261
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 4 cut(s) 263, 436, 505, 625
BtsCI GGATG 2 cut(s) 274, 460
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 503, 616
Cfr10I RCCGGY 1 cut(s) 501
Cfr13I GGNCC 2 cut(s) 83, 434
Csp6I GTAC 2 cut(s) 600, 652
CviAII CATG 1 cut(s) 419
CviQI GTAC 2 cut(s) 600, 652
DdeI CTNAG 1 cut(s) 329
DpnI GATC 8 cut(s) 165, 181, 187, 278, 387, 402, 485, 510
DpnII GATC 8 cut(s) 163, 179, 185, 276, 385, 400, 483, 508
EaeI YGGCCR 2 cut(s) 261, 503
EagI CGGCCG 1 cut(s) 261
EciI GGCGGA 2 cut(s) 323, 339
EclXI CGGCCG 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 83
Eco52I CGGCCG 1 cut(s) 261
EcoNI CCTNNNNNAGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 1 cut(s) 422
FaiI YATR 3 cut(s) 59, 176, 420
FatI CATG 1 cut(s) 418
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 2 cut(s) 558, 589
Fnu4HI GCNGC 6 cut(s) 126, 194, 197, 219, 261, 546
FokI GGATG 2 cut(s) 281, 467
Fsp4HI GCNGC 6 cut(s) 126, 194, 197, 219, 261, 546
FspBI CTAG 2 cut(s) 87, 530
GluI GCNGC 6 cut(s) 126, 194, 197, 219, 261, 546
HaeIII GGCC 4 cut(s) 263, 436, 505, 625
HapII CCGG 3 cut(s) 183, 502, 629
Hin1II CATG 1 cut(s) 422
HincII GTYRAC 2 cut(s) 559, 590
HindII GTYRAC 2 cut(s) 559, 590
HinfI GANTC 2 cut(s) 76, 357
HpaII CCGG 3 cut(s) 183, 502, 629
HphI GGTGA 2 cut(s) 461, 503
Hpy166II GTNNAC 4 cut(s) 55, 559, 590, 643
Hpy188I TCNGA 4 cut(s) 168, 281, 390, 400
Hpy188III TCNNGA 2 cut(s) 183, 568
Hpy8I GTNNAC 4 cut(s) 55, 559, 590, 643
Hpy99I CGWCG 4 cut(s) 304, 484, 591, 594
HpyAV CCTTC 8 cut(s) 49, 127, 306, 314, 372, 656, 660, 684
HpyCH4V TGCA 2 cut(s) 193, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 257
HpyF3I CTNAG 1 cut(s) 329
Hsp92II CATG 1 cut(s) 422
Kpn2I TCCGGA 1 cut(s) 182
KroI GCCGGC 1 cut(s) 501
KroNI GCCGGC 1 cut(s) 503
Kzo9I GATC 8 cut(s) 163, 179, 185, 276, 385, 400, 483, 508
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 4 cut(s) 205, 205, 208, 532
LweI GCATC 1 cut(s) 510
MaeI CTAG 2 cut(s) 87, 530
MalI GATC 8 cut(s) 165, 181, 187, 278, 387, 402, 485, 510
MbiI CCGCTC 2 cut(s) 171, 227
MboI GATC 8 cut(s) 163, 179, 185, 276, 385, 400, 483, 508
MboII GAAGA 2 cut(s) 246, 556
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 4 cut(s) 163, 179, 385, 400
MluCI AATT 1 cut(s) 573
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 9 cut(s) 64, 137, 259, 275, 304, 386, 445, 593, 680
MroI TCCGGA 1 cut(s) 182
MroNI GCCGGC 1 cut(s) 501
MspI CCGG 3 cut(s) 183, 502, 629
MspR9I CCNGG 1 cut(s) 630
MunI CAATTG 1 cut(s) 573
MwoI GCNNNNNNNGC 2 cut(s) 224, 257
NaeI GCCGGC 1 cut(s) 503
NciI CCSGG 1 cut(s) 630
NdeII GATC 8 cut(s) 163, 179, 185, 276, 385, 400, 483, 508
NgoMIV GCCGGC 1 cut(s) 501
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 3 cut(s) 165, 181, 387
NmeAIII GCCGAG 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdiI GCCGGC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 6 cut(s) 127, 195, 198, 220, 262, 547
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PshAI GACNNNNGTC 1 cut(s) 585
PspN4I GGNNCC 3 cut(s) 165, 181, 387
PspPI GGNCC 2 cut(s) 83, 434
PsuI RGATCY 4 cut(s) 163, 179, 385, 400
RsaI GTAC 2 cut(s) 601, 653
RsaNI GTAC 2 cut(s) 600, 652
SalI GTCGAC 2 cut(s) 557, 588
SatI GCNGC 6 cut(s) 126, 194, 197, 219, 261, 546
Sau3AI GATC 8 cut(s) 163, 179, 185, 276, 385, 400, 483, 508
Sau96I GGNCC 2 cut(s) 83, 434
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 1 cut(s) 630
SetI ASST 7 cut(s) 9, 315, 340, 383, 516, 585, 671
SfaNI GCATC 1 cut(s) 510
SgrDI CGTCGACG 1 cut(s) 588
SinI GGWCC 1 cut(s) 83
Sse9I AATT 1 cut(s) 573
SsiI CCGC 6 cut(s) 125, 171, 227, 260, 308, 324
SspMI CTAG 2 cut(s) 87, 530
StyD4I CCNGG 1 cut(s) 628
TaqI TCGA 4 cut(s) 302, 482, 558, 589
TaqII GACCGA 1 cut(s) 11
TasI AATT 1 cut(s) 573
TatI WGTACW 1 cut(s) 599
TauI GCSGC 2 cut(s) 128, 263
TfiI GAWTC 1 cut(s) 76
TscAI CASTG 1 cut(s) 135
TseI GCWGC 4 cut(s) 193, 196, 218, 545
TspDTI ATGAA 1 cut(s) 407
TspGWI ACGGA 2 cut(s) 575, 607
TspRI CASTG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 2 cut(s) 116, 368
XmiI GTMKAC 2 cut(s) 558, 589
XspI CTAG 2 cut(s) 87, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.