Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Reverse (-)

846171 .. 851153

Gene Structure 4983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCTGGCTTGTTAACTATTGATGTTAAGAAAGGATTGGGTGTTATGGATGGGAAGGCTGCAGATGCCGGCGTTTGTAGATTTGGCGACTGGTTGTTAGGTGGCAATGGCGGCGGTGTTGGATCTCTAGGGAAAATTTTGAGTTTTGACTCAATACTTGAAGCTTCAGATACTGCGGCTGTTGGGGAGTTGGGTACTATGCAGATGGAGGAGGACCAGGCTGTTAAGGAGCCTCCTGTTACAGAGGGAGAGATGGAAGGCTTAGCGGCGAAGAACAACAACAACGAAATGAGATCTCCTTTGGCCAAAACGGTACATGATTTTGCAGGTTTTGCCAAGTCGTTAGGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.06

Weight (kDa)

4.55

Isoelectric Point (pI)

28.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AciI	CCGC	4 cut(s)	111, 114, 176, 266
AclWI	GGATC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	196, 315
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	4, 216
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AlwI	GGATC	1 cut(s)	130
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	3 cut(s)	44, 199, 247
BciT130I	CCWGG	2 cut(s)	6, 218
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	317
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	4 cut(s)	60, 112, 177, 267
BlpI	GCTNAGC	1 cut(s)	262
BlsI	GCNGC	4 cut(s)	61, 113, 178, 268
Bme1390I	CCNGG	2 cut(s)	6, 218
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	6, 218
BmsI	GCATC	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	262
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	6, 218
BseGI	GGATG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	69
BsnI	GGCC	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	122, 293
Bsp1720I	GCTNAGC	1 cut(s)	262
BspACI	CCGC	4 cut(s)	111, 114, 176, 266
BspANI	GGCC	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	2 cut(s)	122, 293
Bst2UI	CCWGG	2 cut(s)	6, 218
Bst4CI	ACNGT	1 cut(s)	313
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	125, 296
BstMBI	GATC	2 cut(s)	122, 293
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 111, 332
BstNI	CCWGG	2 cut(s)	6, 218
BstSCI	CCNGG	2 cut(s)	4, 216
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	122, 293
BstYI	RGATCY	2 cut(s)	122, 293
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	70
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	195, 314
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	8 cut(s)	9, 59, 164, 179, 221, 232, 261, 305
CviKI_1	RGCY	8 cut(s)	9, 59, 164, 179, 221, 232, 261, 305
CviQI	GTAC	2 cut(s)	195, 314
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	2 cut(s)	124, 295
DpnII	GATC	2 cut(s)	122, 293
EaeI	YGGCCR	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	4, 216
FaeI	CATG	1 cut(s)	320
FaiI	YATR	3 cut(s)	47, 200, 318
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	60, 112, 177, 267
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	4 cut(s)	60, 112, 177, 267
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	4 cut(s)	60, 112, 177, 267
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	1 cut(s)	149
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	49, 251
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	62, 202, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 111, 332
HpyF3I	CTNAG	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	320
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	122, 293
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	7 cut(s)	18, 76, 82, 203, 230, 249, 312
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	124, 295
MboI	GATC	2 cut(s)	122, 293
MboII	GAAGA	1 cut(s)	283
MflI	RGATCY	2 cut(s)	122, 293
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	1 cut(s)	135
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	4 cut(s)	202, 205, 238, 243
Mox20I	TGGCCA	1 cut(s)	305
MroNI	GCCGGC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	4 cut(s)	14, 27, 225, 352
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	6, 218
MvaI	CCWGG	2 cut(s)	6, 218
MwoI	GCNNNNNNNGC	3 cut(s)	65, 111, 332
NaeI	GCCGGC	1 cut(s)	70
NdeII	GATC	2 cut(s)	122, 293
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	61, 113, 178, 268
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	4, 216
PspGI	CCWGG	2 cut(s)	4, 216
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	2 cut(s)	122, 293
RsaI	GTAC	2 cut(s)	196, 315
RsaNI	GTAC	2 cut(s)	195, 314
SaqAI	TTAA	4 cut(s)	14, 27, 225, 352
SatI	GCNGC	4 cut(s)	60, 112, 177, 267
Sau3AI	GATC	2 cut(s)	122, 293
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	6, 218
SetI	ASST	4 cut(s)	103, 166, 331, 349
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	214
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	4 cut(s)	111, 114, 176, 266
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	4, 216
TaaI	ACNGT	1 cut(s)	313
TasI	AATT	1 cut(s)	135
TauI	GCSGC	3 cut(s)	114, 179, 269
Tru1I	TTAA	4 cut(s)	14, 27, 225, 352
Tru9I	TTAA	4 cut(s)	14, 27, 225, 352
TseI	GCWGC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	135
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.