Rroxscaffold_2G00129360

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
65188742 .. 65206774
18033 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00129360.1

Sequence Viewer

Length: 342 bp
ATGCGGTGGAGGAGGCGGTATAACAGGCGTGGTGGTCGGAATCTCGGGCTTGACGAAGGAGGATTGAAAAGTCGTTTGATGTCGCCGTCGATGGCCTCCACTACCGATGGCGCAGACCACACATCTCGACCACCCTTAATTCCATATAAGAATATACCCCAGCCTCTTTTCAAAAGGGGGAACACAGCAGACACTCACCCTAGACCTGCCGCACTCCCCATTTTCATATACCATCACCCTTCTCTCTCTCTTCCTCTCCAACACACCCAAAACTACTCCTCCACACCATTTCTTCTCCTCACTAAGAACTTCCTCATCAAGATCTATTTTTCACCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.95

Weight (kDa)

10.98

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AciI CCGC 3 cut(s) 4, 16, 210
AgsI TTSAA 2 cut(s) 67, 172
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 188, 227, 324
AvaI CYCGRG 1 cut(s) 44
BccI CCATC 3 cut(s) 85, 101, 240
BceAI ACGGC 1 cut(s) 70
BfaI CTAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 214
BglII AGATCT 1 cut(s) 321
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
BseRI GAGGAG 3 cut(s) 25, 268, 287
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 44
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 3 cut(s) 4, 16, 210
BspANI GGCC 1 cut(s) 95
BspMI ACCTGC 1 cut(s) 214
BssMI GATC 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 1 cut(s) 324
BstMBI GATC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 1 cut(s) 95
BveI ACCTGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 113
CviJI RGCY 3 cut(s) 49, 95, 163
CviKI_1 RGCY 3 cut(s) 49, 95, 163
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 44
FaiI YATR 6 cut(s) 21, 145, 147, 155, 227, 229
Fnu4HI GCNGC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 210
GsaI CCCAGC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 95
HhaI GCGC 1 cut(s) 113
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 1 cut(s) 40
HphI GGTGA 3 cut(s) 188, 227, 324
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 2 cut(s) 126, 319
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 50, 249
HpyF3I CTNAG 1 cut(s) 303
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 321
LpnPI CCDG 3 cut(s) 10, 173, 219
MaeI CTAG 1 cut(s) 201
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 2 cut(s) 242, 284
MflI RGATCY 1 cut(s) 321
MluCI AATT 1 cut(s) 138
MmeI TCCRAC 2 cut(s) 17, 283
MnlI CCTC 9 cut(s) 3, 6, 53, 106, 174, 264, 289, 308, 323
MseI TTAA 1 cut(s) 137
NdeII GATC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 159
PsuI RGATCY 1 cut(s) 321
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 321
SetI ASST 2 cut(s) 208, 337
Sse9I AATT 1 cut(s) 138
SsiI CCGC 3 cut(s) 4, 16, 210
SspMI CTAG 1 cut(s) 201
TaqI TCGA 2 cut(s) 89, 127
TasI AATT 1 cut(s) 138
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 214
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.