Rh6AG489100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001695
Physical Location & Seq
Reverse (-)
66628020 .. 66628283
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG489100.1

Sequence Viewer

Length: 264 bp
ATGGGTTTTCCTGTCAATGGTGGGCGGGTTGATTATGGCGGCGATAGCTTTTCTCTTGTGGAGGAGGAGCCGATCTTTTGGGCTCGAGTTCTTGAGGTCGTGCCTGGCTTGTTAACTATTGATGTCAAGAGAGGATTGGGTGTTGCGGATGGGAAGGCTGCAAATGCCGGCGTTCGTAGATTTGGTGGCTGGTTGTTAGGTGACAATGGCGGTAGTGCTAGATCTTTGGTTGATGATCTTCTTCCTGAGCAAGACTGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.27

Weight (kDa)

4.43

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 25, 39, 146, 210
AfiI CCNNNNNNNGG 1 cut(s) 17
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 84
BanII GRGCYC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 105
BfaI CTAG 1 cut(s) 219
BglII AGATCT 1 cut(s) 221
BisI GCNGC 2 cut(s) 40, 159
BlsI GCNGC 2 cut(s) 41, 160
Bme1390I CCNGG 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 2 cut(s) 77, 80
BseXI GCAGC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 3 cut(s) 72, 221, 235
BspACI CCGC 4 cut(s) 25, 39, 146, 210
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 167
BssMI GATC 3 cut(s) 72, 221, 235
Bst2UI CCWGG 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 3 cut(s) 75, 224, 238
BstMBI GATC 3 cut(s) 72, 221, 235
BstMWI GCNNNNNNNGC 2 cut(s) 45, 164
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 167
CviJI RGCY 6 cut(s) 48, 70, 83, 108, 158, 189
CviKI_1 RGCY 6 cut(s) 48, 70, 83, 108, 158, 189
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 74, 223, 237
DpnII GATC 3 cut(s) 72, 221, 235
Eco24I GRGCYC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 85
FaiI YATR 1 cut(s) 36
FauI CCCGC 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 40, 159
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 40, 159
FspBI CTAG 1 cut(s) 219
GluI GCNGC 2 cut(s) 40, 159
HapII CCGG 1 cut(s) 168
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HpaI GTTAAC 1 cut(s) 114
HpaII CCGG 1 cut(s) 168
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 92, 127, 245
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 164
HpyF3I CTNAG 1 cut(s) 246
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 72, 221, 235
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 7 cut(s) 24, 90, 117, 175, 181, 241, 258
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 200
MalI GATC 3 cut(s) 74, 223, 237
MboI GATC 3 cut(s) 72, 221, 235
MboII GAAGA 2 cut(s) 230, 233
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 85
MnlI CCTC 4 cut(s) 55, 58, 88, 125
MroNI GCCGGC 1 cut(s) 167
MseI TTAA 1 cut(s) 113
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 45, 164
NaeI GCCGGC 1 cut(s) 169
NdeII GATC 3 cut(s) 72, 221, 235
NgoMIV GCCGGC 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 84
PdiI GCCGGC 1 cut(s) 169
PkrI GCNGC 2 cut(s) 41, 160
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 69
PspXI VCTCGAGB 1 cut(s) 84
PsuI RGATCY 1 cut(s) 221
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 2 cut(s) 40, 159
Sau3AI GATC 3 cut(s) 72, 221, 235
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 85
SetI ASST 3 cut(s) 50, 99, 202
Sfr274I CTCGAG 1 cut(s) 84
SlaI CTCGAG 1 cut(s) 84
SmlI CTYRAG 2 cut(s) 84, 92
SmoI CTYRAG 2 cut(s) 84, 92
SsiI CCGC 4 cut(s) 25, 39, 146, 210
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 103
TaqI TCGA 1 cut(s) 85
TauI GCSGC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 84
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.