Rh4CG022900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001695
Physical Location & Seq
Reverse (-)
4468929 .. 4469213
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG022900.1

Sequence Viewer

Length: 285 bp
ATGATGCCCTCTCCGCCTCTCTCTCCCGCCGATCCTGGTCCGTCTCCTCCTCTGATGACTTCAAGCCCTGGACTTTTCCGGCCCTCGATTGGAGCCGTTTCTTCAGGCCTGGGTATAAAAATGGCCTTAAGGGCAGCGACGATGGTGGAGGAAGTCAGTGGTTTTCTGGACAAGGAGGAACCAGAGGTGGTTGAAGGGTGCAAAACGGCGAGTCGTTCGCAAAGGCATGACGGGAAGATGCCTGAAATTCTTCTTCGGGTGGCAGTCGCAGGAGTTAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.77

Weight (kDa)

6.56

Isoelectric Point (pI)

89.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 27
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 89
AflII CTTAAG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 63, 194
AjnI CCWGG 3 cut(s) 34, 67, 108
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 26
AoxI GGCC 3 cut(s) 80, 106, 123
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 38, 81
AvaII GGWCC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 136
BceAI ACGGC 2 cut(s) 80, 222
BciT130I CCWGG 3 cut(s) 36, 69, 110
BcoDI GTCTC 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 3 cut(s) 36, 69, 110
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 38, 81
BmiI GGNNCC 2 cut(s) 94, 180
BmrFI CCNGG 3 cut(s) 36, 69, 110
BmsI GCATC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 67, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseBI CCWGG 3 cut(s) 36, 69, 110
BseDI CCNNGG 2 cut(s) 67, 109
BseLI CCNNNNNNNGG 1 cut(s) 89
BseRI GAGGAG 2 cut(s) 36, 39
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 3 cut(s) 82, 108, 125
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
BsnI GGCC 3 cut(s) 82, 108, 125
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 2 cut(s) 14, 27
BspANI GGCC 3 cut(s) 82, 108, 125
BspLI GGNNCC 2 cut(s) 94, 180
BspPI GGATC 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 67, 109
BssMI GATC 1 cut(s) 31
Bst2UI CCWGG 3 cut(s) 36, 69, 110
BstAFI CTTAAG 1 cut(s) 127
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 13, 131
BstNI CCWGG 3 cut(s) 36, 69, 110
BstSCI CCNGG 3 cut(s) 34, 67, 108
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 3 cut(s) 82, 108, 125
BtsIMutI CAGTG 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 38, 81
CviAII CATG 1 cut(s) 227
CviJI RGCY 5 cut(s) 66, 82, 95, 108, 125
CviKI_1 RGCY 5 cut(s) 66, 82, 95, 108, 125
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 87
EcoRII CCWGG 3 cut(s) 34, 67, 108
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 1 cut(s) 230
FaiI YATR 2 cut(s) 116, 228
FatI CATG 1 cut(s) 226
FauI CCCGC 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 3 cut(s) 82, 108, 125
HapII CCGG 1 cut(s) 79
Hin1II CATG 1 cut(s) 230
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 131
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 228
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 4 cut(s) 93, 242, 245, 247
MluCI AATT 1 cut(s) 246
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 9 cut(s) 19, 27, 57, 60, 94, 142, 169, 178, 272
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 1 cut(s) 128
MspCI CTTAAG 1 cut(s) 127
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 3 cut(s) 36, 69, 110
MvaI CCWGG 3 cut(s) 36, 69, 110
MwoI GCNNNNNNNGC 2 cut(s) 13, 131
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 2 cut(s) 94, 180
PceI AGGCCT 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Psp6I CCWGG 3 cut(s) 34, 67, 108
PspGI CCWGG 3 cut(s) 34, 67, 108
PspN4I GGNNCC 2 cut(s) 94, 180
PspPI GGNCC 2 cut(s) 38, 81
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 2 cut(s) 38, 81
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 3 cut(s) 36, 69, 110
SetI ASST 1 cut(s) 189
SfaNI GCATC 1 cut(s) 228
SinI GGWCC 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 1 cut(s) 246
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 2 cut(s) 14, 27
StuI AGGCCT 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 34, 67, 108
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 246
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.