Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Reverse (-)

62045227 .. 62045889

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG447100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGTTCATGGCAGATCTTTGTCTGCTTATTCTTTTCGTCATATGTCTAGGTGGGGATAAATCTGTGTCAGTTTTGTTTGCTAGTGCTGAGTGTGTTGGATCCGTGATGGTGGTAGATCGTGTTGCGTGGCCGGGTTTAGGGCGCAAGGTGATAGACTTGGCTTCTGTTAGGCATGTCTGGGACTGGCGGTGTGGCTTCAGTGCTAACATGCTGACGGCGGAGAAGCTCTGGATGATGGAACTGTTAGGTAAAGGGTCGTCACCAACTGTGGGCAGCGGTGTTTGCGTTAGCGTCATACATGGTCTGAAGGCCCAAAAGGCAATTAGAAGCAATAATAGGCCTAAGTGTGCTAAAGAGGAGCTGCATACAGATGGTGGAACTGTTGGGGATGCTGGTGCATCATCCTCAACTAGTAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.94

Weight (kDa)

7.61

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	190, 221, 279
AclWI	GGATC	2 cut(s)	96, 109
AcoI	YGGCCR	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	184, 329
AfiI	CCNNNNNNNGG	2 cut(s)	140, 272
AhlI	ACTAGT	1 cut(s)	413
AluBI	AGCT	2 cut(s)	229, 364
AluI	AGCT	2 cut(s)	229, 364
AlwI	GGATC	2 cut(s)	96, 109
AoxI	GGCC	3 cut(s)	131, 312, 341
ApeKI	GCWGC	2 cut(s)	276, 364
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	313
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	163, 255
BamHI	GGATCC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	288, 351
BccI	CCATC	3 cut(s)	103, 232, 368
BceAI	ACGGC	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	135
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	3 cut(s)	50, 84, 414
BglI	GCCNNNNNGGC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	2 cut(s)	277, 365
BlsI	GCNGC	2 cut(s)	278, 366
Bme1390I	CCNGG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	382, 410
BpuMI	CCSGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 272
Bse1I	ACTGG	1 cut(s)	191
BseGI	GGATG	3 cut(s)	240, 397, 404
BseLI	CCNNNNNNNGG	2 cut(s)	140, 272
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	288, 351
BshFI	GGCC	3 cut(s)	133, 314, 343
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	140, 272
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	133, 314, 343
Bsp143I	GATC	3 cut(s)	16, 101, 118
BspACI	CCGC	3 cut(s)	190, 221, 279
BspANI	GGCC	3 cut(s)	133, 314, 343
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	2 cut(s)	96, 109
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	3 cut(s)	16, 101, 118
Bst4CI	ACNGT	3 cut(s)	246, 271, 385
BstDEI	CTNAG	2 cut(s)	90, 345
BstF5I	GGATG	3 cut(s)	240, 397, 404
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	19, 104, 121
BstMBI	GATC	3 cut(s)	16, 101, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 320
BstNSI	RCATGY	2 cut(s)	179, 214
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	288, 351
BstX2I	RGATCY	2 cut(s)	16, 101
BstYI	RGATCY	2 cut(s)	16, 101
BsuRI	GGCC	3 cut(s)	133, 314, 343
BtsCI	GGATG	3 cut(s)	240, 397, 404
BtsIMutI	CAGTG	1 cut(s)	208
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	283
CviAII	CATG	4 cut(s)	10, 176, 211, 302
CviJI	RGCY	7 cut(s)	133, 164, 198, 229, 314, 343, 364
CviKI_1	RGCY	7 cut(s)	133, 164, 198, 229, 314, 343, 364
DdeI	CTNAG	2 cut(s)	90, 345
DpnI	GATC	3 cut(s)	18, 103, 120
DpnII	GATC	3 cut(s)	16, 101, 118
EaeI	YGGCCR	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	236
Eco147I	AGGCCT	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	184, 329
FaeI	CATG	4 cut(s)	13, 179, 214, 305
FaiI	YATR	8 cut(s)	11, 44, 46, 177, 212, 299, 303, 369
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	4 cut(s)	9, 175, 210, 301
FauNDI	CATATG	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	277, 365
FokI	GGATG	3 cut(s)	247, 391, 404
Fsp4HI	GCNGC	2 cut(s)	277, 365
FspBI	CTAG	3 cut(s)	50, 84, 414
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	2 cut(s)	277, 365
HaeIII	GGCC	3 cut(s)	133, 314, 343
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	13, 179, 214, 305
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	2 cut(s)	163, 255
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	3 cut(s)	246, 271, 385
HpyCH4V	TGCA	2 cut(s)	367, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 320
HpyF3I	CTNAG	2 cut(s)	90, 345
Hsp92II	CATG	4 cut(s)	13, 179, 214, 305
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	16, 101, 118
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	5 cut(s)	147, 166, 172, 217, 381
Lsp1109I	GCAGC	2 cut(s)	288, 351
LweI	GCATC	2 cut(s)	382, 410
MaeI	CTAG	3 cut(s)	50, 84, 414
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	3 cut(s)	18, 103, 120
MboI	GATC	3 cut(s)	16, 101, 118
MflI	RGATCY	2 cut(s)	16, 101
MluCI	AATT	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	352, 418
MseI	TTAA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	285, 320
NciI	CCSGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	3 cut(s)	16, 101, 118
NlaIII	CATG	4 cut(s)	13, 179, 214, 305
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	261
NspI	RCATGY	2 cut(s)	179, 214
PceI	AGGCCT	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	278, 366
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	16, 101
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	2 cut(s)	277, 365
Sau3AI	GATC	3 cut(s)	16, 101, 118
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	5 cut(s)	55, 153, 231, 253, 366
SfaNI	GCATC	2 cut(s)	382, 410
SmiMI	CAYNNNNRTG	1 cut(s)	372
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	1 cut(s)	324
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	3 cut(s)	190, 221, 279
SspMI	CTAG	3 cut(s)	50, 84, 414
StuI	AGGCCT	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	246, 271, 385
TasI	AATT	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	2 cut(s)	276, 364
Tsp45I	GTSAC	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	208
XceI	RCATGY	2 cut(s)	179, 214
XspI	CTAG	3 cut(s)	50, 84, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.