Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Reverse (-)

49869270 .. 49869683

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGATTCGGATTGTTGCGGCGGTTGGCGTCGGGCTTAGTGTCTGCGAGAGTAGGGATTAGTGGTTGTCGGTTCGCTACTTCGGCGGTCGAGGATGATGAGATCGTAGGCGAATCTAGTCCTTATTCTATGGCGGAGGTAATTGAAGGCGGGCCGAGATTAGGTTTTGACGATGGTGGTAGAGTCCATCTTGTTGGTGGTGGAGGGTGGGATCCGGGAGGGTCGAATATCTCGCCTCTCTTCCATGGTGGTATCAAAAGGCCGACTTATCTCGGCAAGGATGGTGGTTTTTCGAGCGTGCTATCGTCGATCGAGTGGGTTTTCTCCGGCGGATCACTTAATGATGCTACTACCGAATGTGGGTTCGCGGCTTGTGATGTCGACTTCTTCTTGACGCTTGATGACCTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.22

Weight (kDa)

4.52

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	1 cut(s)	368
AciI	CCGC	7 cut(s)	19, 22, 86, 134, 150, 330, 368
AclWI	GGATC	3 cut(s)	206, 219, 340
AcyI	GRCGYC	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	161, 360
AgsI	TTSAA	1 cut(s)	146
AlwI	GGATC	3 cut(s)	206, 219, 340
AoxI	GGCC	2 cut(s)	152, 260
AspS9I	GGNCC	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	211
BccI	CCATC	3 cut(s)	167, 195, 275
BcnI	CCSGG	1 cut(s)	216
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	20, 369
BlsI	GCNGC	2 cut(s)	21, 370
Bme1390I	CCNGG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 360
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	100, 286
BseLI	CCNNNNNNNGG	2 cut(s)	161, 360
Bsh1236I	CGCG	1 cut(s)	368
Bsh1285I	CGRYCG	2 cut(s)	90, 312
BshFI	GGCC	2 cut(s)	154, 262
BsiEI	CGRYCG	2 cut(s)	90, 312
BsiSI	CCGG	2 cut(s)	215, 327
BslI	CCNNNNNNNGG	2 cut(s)	161, 360
BsnI	GGCC	2 cut(s)	154, 262
Bsp143I	GATC	4 cut(s)	102, 211, 309, 332
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	7 cut(s)	19, 22, 86, 134, 150, 330, 368
BspANI	GGCC	2 cut(s)	154, 262
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	3 cut(s)	206, 219, 340
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	102, 211, 309, 332
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	152, 299
BstDEI	CTNAG	1 cut(s)	37
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	100, 286
BstFNI	CGCG	1 cut(s)	368
BstKTI	GATC	4 cut(s)	105, 214, 312, 335
BstMBI	GATC	4 cut(s)	102, 211, 309, 332
BstMCI	CGRYCG	2 cut(s)	90, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	214
BstUI	CGCG	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	154, 262
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	100, 286
Cac8I	GCNNGC	2 cut(s)	152, 299
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	2 cut(s)	18, 403
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	4 cut(s)	36, 154, 262, 371
CviKI_1	RGCY	4 cut(s)	36, 154, 262, 371
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	4 cut(s)	104, 213, 311, 334
DpnII	GATC	4 cut(s)	102, 211, 309, 332
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	2 cut(s)	149, 345
Eco130I	CCWWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	1 cut(s)	248
FaiI	YATR	2 cut(s)	131, 246
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	20, 369
FokI	GGATG	2 cut(s)	107, 293
Fsp4HI	GCNGC	2 cut(s)	20, 369
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	2 cut(s)	20, 369
HaeIII	GGCC	2 cut(s)	154, 262
HapII	CCGG	2 cut(s)	215, 327
HgaI	GACGC	2 cut(s)	18, 403
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	3 cut(s)	6, 113, 183
HpaII	CCGG	2 cut(s)	215, 327
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	391
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	2 cut(s)	34, 310
HpyAV	CCTTC	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	4 cut(s)	102, 211, 309, 332
LpnPI	CCDG	2 cut(s)	228, 340
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	117
MalI	GATC	4 cut(s)	104, 213, 311, 334
MboI	GATC	4 cut(s)	102, 211, 309, 332
MboII	GAAGA	2 cut(s)	232, 379
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	5 cut(s)	85, 130, 197, 212, 246
MseI	TTAA	1 cut(s)	339
MspI	CCGG	2 cut(s)	215, 327
MspR9I	CCNGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	4 cut(s)	102, 211, 309, 332
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	213
NmeAIII	GCCGAG	2 cut(s)	180, 252
PfeI	GAWTC	2 cut(s)	6, 113
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	21, 370
Ple19I	CGATCG	1 cut(s)	312
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	312
SalI	GTCGAC	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	20, 369
Sau3AI	GATC	4 cut(s)	102, 211, 309, 332
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	3 cut(s)	141, 166, 408
SfaNI	GCATC	1 cut(s)	334
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	7 cut(s)	19, 22, 86, 134, 150, 330, 368
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	244
TaqI	TCGA	6 cut(s)	90, 224, 293, 308, 312, 381
TasI	AATT	1 cut(s)	141
TauI	GCSGC	2 cut(s)	22, 371
TfiI	GAWTC	2 cut(s)	6, 113
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.