Rmu_sc0003942.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003942.1
OG0001695
Physical Location & Seq
Forward (+)
60368 .. 60933
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003942.1_g000012.1.cds

Sequence Viewer

Length: 432 bp
atgcgtccgtcgcgtcctacaccttctccattcatgggggtttcttcatgcttccaccttgtcatgtttgccttcattgtggtcgtgggcacagtgtgtgttgaggggaatcctggtcctagtgttagtttattggagaaccaagagagtgctgggtcggcagtgaagggtgggatcagtggttgggttcctgtcgtttgtggcggtgattgccttctctggcaaaattggggtggttgtcaattcgctactttggcggtcgtggcgaaggtcattgaaggcgggctgaaattagattttgatgatagtggtggagtccgtgttgttggtggtagaggatgctcggatcacttgacgatgctactaccagattgtgggttcgcggcttgtgatgacatcgacttcttcttagcagttgatgactttcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

14.96

Weight (kDa)

4.47

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AccII CGCG 2 cut(s) 13, 383
AciI CCGC 4 cut(s) 204, 257, 282, 383
AclWI GGATC 2 cut(s) 182, 354
AdeI CACNNNGTG 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 35, 374
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 1 cut(s) 112
AlwI GGATC 2 cut(s) 182, 354
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 114
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 329, 348
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 306, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 374
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 2 cut(s) 35, 374
BseSI GKGCMC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 152
Bsh1236I CGCG 2 cut(s) 13, 383
Bsh1285I CGRYCG 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 35, 374
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 174, 346
BspACI CCGC 4 cut(s) 204, 257, 282, 383
BspFNI CGCG 2 cut(s) 13, 383
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 2 cut(s) 182, 354
BssMI GATC 2 cut(s) 174, 346
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 409
BstF5I GGATG 1 cut(s) 344
BstFNI CGCG 2 cut(s) 13, 383
BstKTI GATC 2 cut(s) 177, 349
BstMBI GATC 2 cut(s) 174, 346
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 5 cut(s) 10, 158, 210, 254, 263
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 2 cut(s) 13, 383
BtsCI GGATG 1 cut(s) 344
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 3 cut(s) 99, 168, 184
Cac8I GCNNGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 116
CseI GACGC 1 cut(s) 2
CviAII CATG 3 cut(s) 34, 48, 64
CviJI RGCY 2 cut(s) 286, 386
CviKI_1 RGCY 2 cut(s) 286, 386
DdeI CTNAG 1 cut(s) 409
DpnI GATC 2 cut(s) 176, 348
DpnII GATC 2 cut(s) 174, 346
DraIII CACNNNGTG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 3 cut(s) 37, 51, 67
FaiI YATR 3 cut(s) 35, 49, 65
FatI CATG 3 cut(s) 33, 47, 63
FauI CCCGC 1 cut(s) 275
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 384
GsaI CCCAGC 1 cut(s) 156
HgaI GACGC 1 cut(s) 2
Hin1II CATG 3 cut(s) 37, 51, 67
HinfI GANTC 2 cut(s) 109, 315
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 6 cut(s) 33, 82, 160, 224, 262, 272
HpyCH4III ACNGT 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 158, 210, 254, 263
HpyF3I CTNAG 1 cut(s) 409
Hsp92II CATG 3 cut(s) 37, 51, 67
Kzo9I GATC 2 cut(s) 174, 346
LpnPI CCDG 6 cut(s) 99, 126, 138, 204, 205, 381
LweI GCATC 2 cut(s) 329, 348
MaeI CTAG 1 cut(s) 120
MalI GATC 2 cut(s) 176, 348
MboI GATC 2 cut(s) 174, 346
MboII GAAGA 2 cut(s) 36, 397
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 3 cut(s) 226, 242, 290
MlyI GAGTC 1 cut(s) 324
MnlI CCTC 2 cut(s) 97, 329
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 2 cut(s) 13, 383
MwoI GCNNNNNNNGC 5 cut(s) 10, 158, 210, 254, 263
NdeII GATC 2 cut(s) 174, 346
NlaIII CATG 3 cut(s) 37, 51, 67
NlaIV GGNNCC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 116
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 174, 346
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 92
SetI ASST 3 cut(s) 25, 60, 273
SfaNI GCATC 2 cut(s) 329, 348
SinI GGWCC 1 cut(s) 116
Sse9I AATT 3 cut(s) 226, 242, 290
SsiI CCGC 4 cut(s) 204, 257, 282, 383
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 399, 427
TasI AATT 3 cut(s) 226, 242, 290
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 3 cut(s) 99, 168, 184
TspDTI ATGAA 3 cut(s) 22, 36, 64
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 3 cut(s) 99, 168, 184
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.