Rh2DG379100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
54425230 .. 54425586
357 bp
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UTR
Exon/CDS
Intron
Rh2DG379100.1

Sequence Viewer

Length: 357 bp
ATGTTTGGGTTTCAAGGGGATGCTACTCTTAAATGGCGGAGGATGTTTTGGTGTGGGCTTGCCAGCGAGACAGGGGATTCTTTAGTGGCAAATGATCATGGACGAGGTTGTCTTCTCCAACCAAATCGTCAGGATCCATCATTGTTGCTACCAAATTGTGGGTTCGTGTTGAGTGACTTTCTCGGAGGAATTGATGATCTCCGACGCCATCGTGGTATGGATGGTGGTGCTTATGTCAGGCCATCGACTTTCCTGGATCAGCGATGTGGGATGATAAACAGTATCGTGGTCAAGTGGTGCATCGCAAGCAACGGGAGCGTAGGACGAGATGAACTGGTTGCCATCAACACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.98

Weight (kDa)

6.7

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 158
AciI CCGC 1 cut(s) 37
AclWI GGATC 3 cut(s) 128, 141, 264
AcyI GRCGYC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 3 cut(s) 128, 141, 264
AoxI GGCC 1 cut(s) 239
BamHI GGATCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 104
BccI CCATC 5 cut(s) 145, 215, 216, 250, 350
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 2 cut(s) 10, 309
BpiI GAAGAC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 254
BseGI GGATG 4 cut(s) 25, 48, 226, 276
BseLI CCNNNNNNNGG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 339
BshFI GGCC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 4 cut(s) 94, 133, 196, 256
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 3 cut(s) 128, 141, 264
BsrI ACTGG 1 cut(s) 339
BssMI GATC 4 cut(s) 94, 133, 196, 256
BssNI GRCGYC 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 60, 64, 307
BstF5I GGATG 4 cut(s) 25, 48, 226, 276
BstKTI GATC 4 cut(s) 97, 136, 199, 259
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 4 cut(s) 94, 133, 196, 256
BstMWI GCNNNNNNNGC 2 cut(s) 306, 315
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 241
BtgZI GCGATG 2 cut(s) 277, 286
BtsCI GGATG 4 cut(s) 25, 48, 226, 276
Cac8I GCNNGC 3 cut(s) 60, 64, 307
CseI GACGC 1 cut(s) 213
CviAII CATG 1 cut(s) 98
CviJI RGCY 2 cut(s) 58, 241
CviKI_1 RGCY 2 cut(s) 58, 241
DpnI GATC 4 cut(s) 96, 135, 198, 258
DpnII GATC 4 cut(s) 94, 133, 196, 256
DrdI GACNNNNNNGTC 1 cut(s) 108
DseDI GACNNNNNNGTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 252
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 99, 218, 234
FatI CATG 1 cut(s) 97
FbaI TGATCA 1 cut(s) 94
FokI GGATG 4 cut(s) 32, 55, 233, 283
HaeIII GGCC 1 cut(s) 241
HgaI GACGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 1 cut(s) 101
HinfI GANTC 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 185, 203, 356
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 207
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 306, 315
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 133, 196, 256
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 7 cut(s) 57, 76, 116, 223, 239, 266, 320
LweI GCATC 2 cut(s) 10, 309
MaeIII GTNAC 1 cut(s) 173
MalI GATC 4 cut(s) 96, 135, 198, 258
MboI GATC 4 cut(s) 94, 133, 196, 256
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 133
MluCI AATT 2 cut(s) 154, 189
MmeI TCCRAC 2 cut(s) 142, 226
MnlI CCTC 3 cut(s) 33, 98, 179
MseI TTAA 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 306, 315
NdeII GATC 4 cut(s) 94, 133, 196, 256
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 158
PfoI TCCNGGA 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 133
SaqAI TTAA 1 cut(s) 30
Sau3AI GATC 4 cut(s) 94, 133, 196, 256
ScrFI CCNGG 1 cut(s) 254
SetI ASST 1 cut(s) 109
SfaNI GCATC 2 cut(s) 10, 309
Sse9I AATT 2 cut(s) 154, 189
SsiI CCGC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 245
TasI AATT 2 cut(s) 154, 189
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 345
Van91I CCANNNNNTGG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.