Rh5CG410600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001695
Physical Location & Seq
Forward (+)
55438445 .. 55444846
6402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG410600.1

Sequence Viewer

Length: 318 bp
ATGGTGTTCATGACAGATCTTCGTCTGCTTATTCTTTTTCTTGTTTGTCTGGGTGGGGATAAATCTATGTCGGTTTTGTTTGCTGGTGCCGAGTATGTTGGATCAACAATGGTGGTAGTTCGTGTTGCGCGGCCGGGTTTAGGGCGCAAGGTAGCAGACTTGGCTTATGCTAGATTGGGATGGTTTGCCGGTGTGAAGGATCCGATCTGGGACAGTCAACCACCAAAGAAATATGTACCAAGCCTGAATGCCAAATCTTTCCCGTACAAGCGGGCGTACATGTGTCTATATCTCCAAAAGTCGACACTCAGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

9.78

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 302
AccII CGCG 1 cut(s) 130
AciI CCGC 2 cut(s) 130, 271
AclWI GGATC 3 cut(s) 109, 194, 207
AcoI YGGCCR 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 3 cut(s) 237, 266, 278
AfiI CCNNNNNNNGG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 279
AlwI GGATC 3 cut(s) 109, 194, 207
AoxI GGCC 1 cut(s) 131
AspLEI GCGC 2 cut(s) 130, 147
AsuC2I CCSGG 1 cut(s) 135
BamHI GGATCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 86
BccI CCATC 1 cut(s) 174
BcnI CCSGG 1 cut(s) 135
BfaI CTAG 1 cut(s) 171
BglII AGATCT 1 cut(s) 16
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 88, 201
BmrFI CCNGG 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 188
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 140
BseX3I CGGCCG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 133
BshNI GGYRCC 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 134, 189
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 1 cut(s) 133
Bsp143I GATC 4 cut(s) 16, 101, 199, 204
BspACI CCGC 2 cut(s) 130, 271
BspANI GGCC 1 cut(s) 133
BspFNI CGCG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 88, 201
BspPI GGATC 3 cut(s) 109, 194, 207
BspT107I GGYRCC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssMI GATC 4 cut(s) 16, 101, 199, 204
Bst4CI ACNGT 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 2 cut(s) 130, 147
BstKTI GATC 4 cut(s) 19, 104, 202, 207
BstMBI GATC 4 cut(s) 16, 101, 199, 204
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 133
BstUI CGCG 1 cut(s) 130
BstX2I RGATCY 2 cut(s) 16, 199
BstYI RGATCY 2 cut(s) 16, 199
BstZI CGGCCG 1 cut(s) 131
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 273
CciI TCATGA 1 cut(s) 9
CfoI GCGC 2 cut(s) 130, 147
Cfr10I RCCGGY 1 cut(s) 188
Csp6I GTAC 3 cut(s) 236, 265, 277
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 2 cut(s) 10, 280
CviJI RGCY 3 cut(s) 133, 164, 243
CviKI_1 RGCY 3 cut(s) 133, 164, 243
CviQI GTAC 3 cut(s) 236, 265, 277
DdeI CTNAG 1 cut(s) 308
DpnI GATC 4 cut(s) 18, 103, 201, 206
DpnII GATC 4 cut(s) 16, 101, 199, 204
DraIII CACNNNGTG 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 131
EagI CGGCCG 1 cut(s) 131
EclXI CGGCCG 1 cut(s) 131
Eco52I CGGCCG 1 cut(s) 131
FaeI CATG 2 cut(s) 13, 283
FaiI YATR 7 cut(s) 11, 68, 96, 168, 234, 281, 289
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 9, 279
FauI CCCGC 1 cut(s) 264
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 171
GlaI GCGC 2 cut(s) 129, 146
GluI GCNGC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 133
HapII CCGG 2 cut(s) 134, 189
HhaI GCGC 2 cut(s) 130, 147
Hin1II CATG 2 cut(s) 13, 283
Hin6I GCGC 2 cut(s) 128, 145
HinP1I GCGC 2 cut(s) 128, 145
HincII GTYRAC 2 cut(s) 218, 303
HindII GTYRAC 2 cut(s) 218, 303
HpaII CCGG 2 cut(s) 134, 189
Hpy166II GTNNAC 2 cut(s) 218, 303
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 218, 303
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 2 cut(s) 13, 283
HspAI GCGC 2 cut(s) 128, 145
Kzo9I GATC 4 cut(s) 16, 101, 199, 204
LpnPI CCDG 6 cut(s) 35, 69, 147, 193, 202, 257
MaeI CTAG 1 cut(s) 171
MalI GATC 4 cut(s) 18, 103, 201, 206
MboI GATC 4 cut(s) 16, 101, 199, 204
MboII GAAGA 1 cut(s) 11
MflI RGATCY 2 cut(s) 16, 199
MmeI TCCRAC 1 cut(s) 79
MseI TTAA 1 cut(s) 316
MspI CCGG 2 cut(s) 134, 189
MspR9I CCNGG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 253
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 135
NdeII GATC 4 cut(s) 16, 101, 199, 204
NlaIII CATG 2 cut(s) 13, 283
NlaIV GGNNCC 2 cut(s) 88, 201
NmeAIII GCCGAG 1 cut(s) 115
NspI RCATGY 1 cut(s) 283
PagI TCATGA 1 cut(s) 9
PciI ACATGT 1 cut(s) 279
PctI GAATGC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 132
PscI ACATGT 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 88, 201
PsuI RGATCY 2 cut(s) 16, 199
RsaI GTAC 3 cut(s) 237, 266, 278
RsaNI GTAC 3 cut(s) 236, 265, 277
SalI GTCGAC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 4 cut(s) 16, 101, 199, 204
ScrFI CCNGG 1 cut(s) 135
SetI ASST 1 cut(s) 153
SsiI CCGC 2 cut(s) 130, 271
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 302
TauI GCSGC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 1 cut(s) 316
TspRI CASTG 1 cut(s) 316
XceI RCATGY 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 302
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.