RchiOBHm_Chr7g0235671

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
60463043 .. 60463285
243 bp
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UTR
Exon/CDS
Intron
PRQ21118

Sequence Viewer

Length: 159 bp
ATGCAAGATCAATGGCAAAAGGGAAATCTTATTGGTCGTGGCACTTTTAGCAGTGTTTATCTTGCTACCAATAGAGAAACTGGAGCTTTATGTGCAATGAAGGAAGTTGAACTACTTCCTGATGACTCGAAATCAGCAGAGTGTATAAAGCAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

5.78

Weight (kDa)

5.1

Isoelectric Point (pI)

21.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 46 2.6e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 2 cut(s) 86, 154
AluI AGCT 2 cut(s) 86, 154
ApeKI GCWGC 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 114
BarI GAAGNNNNNNTAC 2 cut(s) 96, 128
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 85
Bsp143I GATC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 85
BssMI GATC 1 cut(s) 7
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 48, 92
BstSFI CTRYAG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
CviJI RGCY 2 cut(s) 86, 154
CviKI_1 RGCY 2 cut(s) 86, 154
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
FaiI YATR 3 cut(s) 91, 146, 157
Fnu4HI GCNGC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 152
FspEI CC 8 cut(s) 5, 6, 18, 24, 66, 82, 86, 132
GluI GCNGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 102
HinfI GANTC 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 4, 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 92
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 2 cut(s) 66, 132
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MlyI GAGTC 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 48, 92
NdeII GATC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 153
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 119
SetI ASST 2 cut(s) 88, 156
SfcI CTRYAG 1 cut(s) 155
SgeI CNNG 6 cut(s) 17, 50, 74, 93, 131, 139
TaqI TCGA 1 cut(s) 128
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.