Rmu_sc0003825.1_g000019

Mitogen-activated protein kinase kinase kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003825.1
OG0001271
Physical Location & Seq
Reverse (-)
78037 .. 80455
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003825.1_g000019.1.cds

Sequence Viewer

Length: 507 bp
atgccacaactgcccgaaaccgctcaaaagaaccaattgcaacagttgcaacgacaaccgtttcaacaaattaaagacggttgttcactggacttcgctgcatctggtttggggatggggattgttaacagagaaactggagctttatgtgcaatgaaggaagttgaactacttcctgatgacccgaaatcagcagagtgtataaagcagctacagcaggaaatcaaagtcctcagccagctcaagcatcctaatattgtgcagtactatggaagtgaaattgttgaagatcggttttttatatatctggaatatgttcatcctggttctattaacaaatatgttcatgaacactgtggagccatgacagaagctgttgttcgcagttttactcgccatatagtctctgggttggcttacttgcacagcacaaaaacaatacacagggacatcaaaggggctaatttgcttgtggattcatgtggggttgtcaagctagctagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0000187 GO:0001932 GO:0001934 GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009719 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0032101 GO:0032147 GO:0032268 GO:0032270 GO:0032879 GO:0033554 GO:0033674 GO:0035556 GO:0035690 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1900150 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:2000071
KEGG Pathways
Metabolic & Signaling
ko04010 ko04722 ko04912 ko05166 map04010 map04722 map04912 map05166
Pfam Domains
Protein Families
Pkinase

Protein Analysis

168

Amino Acids

18.78

Weight (kDa)

6.64

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 1 cut(s) 21
AfaI GTAC 1 cut(s) 266
AgsI TTSAA 3 cut(s) 65, 167, 287
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 7 cut(s) 143, 211, 241, 374, 496, 500, 504
AluI AGCT 7 cut(s) 143, 211, 241, 374, 496, 500, 504
Alw26I GTCTC 1 cut(s) 409
AlwNI CAGNNNCTG 1 cut(s) 374
ApeKI GCWGC 2 cut(s) 98, 208
Asp700I GAANNNNTTC 2 cut(s) 171, 315
AsuNHI GCTAGC 2 cut(s) 496, 500
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 85, 220
BccI CCATC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 2 cut(s) 497, 501
BfmI CTRYAG 1 cut(s) 212
BisI GCNGC 2 cut(s) 99, 209
BlsI GCNGC 2 cut(s) 100, 210
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 110, 256
BmtI GCTAGC 2 cut(s) 500, 504
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 93, 142
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 324
BseGI GGATG 3 cut(s) 120, 247, 319
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 93, 142
BseXI GCAGC 2 cut(s) 85, 220
BsgI GTGCAG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 461
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 461
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 361
BspOI GCTAGC 2 cut(s) 500, 504
BsrBI CCGCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 2 cut(s) 93, 142
BssMI GATC 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 4 cut(s) 45, 60, 80, 356
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 3 cut(s) 239, 498, 502
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 3 cut(s) 120, 247, 319
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 4 cut(s) 10, 46, 149, 214
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 212
BstV1I GCAGC 2 cut(s) 85, 220
BtsCI GGATG 3 cut(s) 120, 247, 319
BtsIMutI CAGTG 2 cut(s) 86, 352
Cac8I GCNNGC 3 cut(s) 239, 498, 502
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 346
Csp6I GTAC 1 cut(s) 265
CviAII CATG 3 cut(s) 347, 364, 480
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 1 cut(s) 233
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 322
FaeI CATG 3 cut(s) 350, 367, 483
FaqI GGGAC 1 cut(s) 461
FatI CATG 3 cut(s) 346, 363, 479
Fnu4HI GCNGC 2 cut(s) 99, 209
FokI GGATG 3 cut(s) 127, 234, 306
Fsp4HI GCNGC 2 cut(s) 99, 209
FspBI CTAG 2 cut(s) 497, 501
GluI GCNGC 2 cut(s) 99, 209
GsuI CTGGAG 1 cut(s) 159
Hin1II CATG 3 cut(s) 350, 367, 483
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 476
HpaI GTTAAC 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 86, 127
Hpy188III TCNNGA 3 cut(s) 176, 308, 347
Hpy8I GTNNAC 2 cut(s) 86, 127
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 4 cut(s) 45, 60, 80, 356
HpyCH4V TGCA 6 cut(s) 40, 49, 101, 152, 262, 424
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 46, 149, 214
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 3 cut(s) 350, 367, 483
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 2 cut(s) 140, 359
Lsp1109I GCAGC 2 cut(s) 85, 220
LweI GCATC 2 cut(s) 110, 256
MaeI CTAG 2 cut(s) 497, 501
MalI GATC 1 cut(s) 291
MbiI CCGCTC 1 cut(s) 23
MboI GATC 1 cut(s) 289
MboII GAAGA 1 cut(s) 299
MfeI CAATTG 1 cut(s) 35
MluCI AATT 4 cut(s) 35, 69, 279, 463
MnlI CCTC 1 cut(s) 242
MroXI GAANNNNTTC 2 cut(s) 171, 315
MseI TTAA 3 cut(s) 72, 126, 333
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 4 cut(s) 10, 46, 149, 214
NdeII GATC 1 cut(s) 289
NheI GCTAGC 2 cut(s) 496, 500
NlaIII CATG 3 cut(s) 350, 367, 483
NlaIV GGNNCC 1 cut(s) 361
PagI TCATGA 1 cut(s) 346
PdmI GAANNNNTTC 2 cut(s) 171, 315
PfeI GAWTC 1 cut(s) 476
PkrI GCNGC 2 cut(s) 100, 210
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 3 cut(s) 72, 126, 333
SatI GCNGC 2 cut(s) 99, 209
Sau3AI GATC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 324
SetI ASST 7 cut(s) 145, 213, 243, 376, 498, 502, 506
SfaNI GCATC 2 cut(s) 110, 256
SfcI CTRYAG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 4 cut(s) 35, 69, 279, 463
SsiI CCGC 1 cut(s) 21
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 497, 501
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 4 cut(s) 45, 60, 80, 356
TasI AATT 4 cut(s) 35, 69, 279, 463
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 3 cut(s) 72, 126, 333
Tru9I TTAA 3 cut(s) 72, 126, 333
TscAI CASTG 2 cut(s) 93, 359
TseI GCWGC 2 cut(s) 98, 208
TspDTI ATGAA 5 cut(s) 170, 308, 335, 363, 468
TspRI CASTG 2 cut(s) 93, 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XmnI GAANNNNTTC 2 cut(s) 171, 315
XspI CTAG 2 cut(s) 497, 501
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.