Rmu_sc0003110.1_g000018

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003110.1
OG0001406
Physical Location & Seq
Forward (+)
86533 .. 87711
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
atggctggtgttgaggatgtgacttcgaagcttgctgcggcccttgccattgggggagatgacttccacaatgaggatccagcggtggagttggcagatccaacctatcattggttggtggggcgtctggtctctgtggatccgatgaaagtggcgccgcacaggtttatggcccaaatcggacagatctggcctgtggctgaccatgggttggtgatccgtgaacgaccaaataggcgatttctcttccgctttgttaatccgaccgataagcaacgggttttggctaaatcactatggtattatcgttcggcaatgttggttttaggggactatgatggggtgggtgatatcatggaggtgactctgaatcgattgccgatttggatccagatcagaggattactgccggcttattccacaccgagttgggcaaggaaggttgctgggtgcttgggtcaggttgttcatgtggatgaaaggagattgaagtggcataaggaagtgaaggtgttggtggtggtggatctcgttcgtccccttcctcggcattttaggtactcattttctaattcttgtgtgaaagagattgatattgagtatttgaatgtcaggggtttgtgcttggtttgtgggttctttgagcatggtgtgggaggttgtggtggtcctccaaaggaagtgtggaatacaggtgtggctgtaacctcatctggaggtggacagttgagtgtggttttacagggtgattcatcggtggtggtggaggctgttccccgtccgagtgggatgggagtatcaccgagttttgaagctttactgggatctaaggtggtgggtgaccatcctgggattgggccattaatgttggaagggaagatagattctcggccgctggtgttggaggagagtgttgatgaggtacaggttatggttaggtcaatgcttgggaaaaagggtggtgatggtgaagttatgtctccattgaagaaagggaggttgtgttctgaatctggtgttgatcgagggcttagtgactcatctagagttgttgtgggaggtgtgccattggctcctggtagtccagattccttgggtcattggaagcataggatatatatatgtttccactttcagttttgggatggagggctcccctaccaaaggcttgcagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

392

Amino Acids

42.92

Weight (kDa)

7.67

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 62 - 109 9.9e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 211
AciI CCGC 5 cut(s) 38, 83, 158, 250, 893
AcoI YGGCCR 1 cut(s) 890
AcyI GRCGYC 2 cut(s) 124, 155
AfaI GTAC 2 cut(s) 560, 924
AfiI CCNNNNNNNGG 6 cut(s) 73, 111, 211, 546, 854, 1164
AgsI TTSAA 4 cut(s) 490, 607, 812, 988
AjnI CCWGG 2 cut(s) 847, 1075
AloI GAACNNNNNNTCC 2 cut(s) 988, 1020
AluBI AGCT 2 cut(s) 31, 815
AluI AGCT 2 cut(s) 31, 815
Alw26I GTCTC 2 cut(s) 136, 984
AoxI GGCC 5 cut(s) 39, 171, 191, 857, 890
ApeKI GCWGC 1 cut(s) 35
AseI ATTAAT 1 cut(s) 863
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 4 cut(s) 40, 172, 668, 857
AsuHPI GGTGA 8 cut(s) 226, 359, 373, 758, 792, 851, 974, 980
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 668
BamHI GGATCC 3 cut(s) 76, 139, 387
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 1155
BbvI GCAGC 1 cut(s) 22
BccI CCATC 5 cut(s) 332, 784, 852, 959, 1139
BciT130I CCWGG 2 cut(s) 849, 1077
BcoDI GTCTC 2 cut(s) 136, 984
BfaI CTAG 1 cut(s) 1044
BfoI RGCGCY 1 cut(s) 158
BglII AGATCT 1 cut(s) 186
BisI GCNGC 4 cut(s) 36, 39, 158, 893
BlsI GCNGC 4 cut(s) 37, 40, 159, 894
Bme1390I CCNGG 2 cut(s) 849, 1077
Bme18I GGWCC 1 cut(s) 668
BmgT120I GGNCC 4 cut(s) 40, 172, 668, 857
BmiI GGNNCC 6 cut(s) 78, 141, 156, 389, 1074, 1154
BmrFI CCNGG 2 cut(s) 849, 1077
BmrI ACTGGG 1 cut(s) 830
BmuI ACTGGG 1 cut(s) 830
BpmI CTGGAG 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 373
BsaBI GATNNNNATC 2 cut(s) 386, 392
BsaHI GRCGYC 2 cut(s) 124, 155
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 4 cut(s) 205, 545, 848, 1092
BsaXI ACNNNNNCTCC 2 cut(s) 988, 1018
Bsc4I CCNNNNNNNGG 6 cut(s) 73, 111, 211, 546, 854, 1164
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 825
Bse3DI GCAATG 1 cut(s) 321
Bse8I GATNNNNATC 2 cut(s) 386, 392
BseBI CCWGG 2 cut(s) 849, 1077
BseCI ATCGAT 1 cut(s) 373
BseDI CCNNGG 4 cut(s) 205, 545, 848, 1092
BseGI GGATG 5 cut(s) 22, 481, 795, 844, 1150
BseJI GATNNNNATC 2 cut(s) 386, 392
BseLI CCNNNNNNNGG 6 cut(s) 73, 111, 211, 546, 854, 1164
BseMI GCAATG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 1 cut(s) 920
BseX3I CGGCCG 1 cut(s) 890
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 446
Bsh1285I CGRYCG 2 cut(s) 267, 893
BshFI GGCC 5 cut(s) 41, 173, 193, 859, 892
BshNI GGYRCC 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 373
BsiEI CGRYCG 2 cut(s) 267, 893
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 2 cut(s) 344, 522
BslI CCNNNNNNNGG 6 cut(s) 73, 111, 211, 546, 854, 1164
BsmAI GTCTC 2 cut(s) 136, 984
BsmFI GGGAC 2 cut(s) 344, 522
BsnI GGCC 5 cut(s) 41, 173, 193, 859, 892
Bso31I GGTCTC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 1155
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 5 cut(s) 38, 83, 158, 250, 893
BspANI GGCC 5 cut(s) 41, 173, 193, 859, 892
BspDI ATCGAT 1 cut(s) 373
BspLI GGNNCC 6 cut(s) 78, 141, 156, 389, 1074, 1154
BspT104I TTCGAA 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 1 cut(s) 825
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 4 cut(s) 205, 545, 848, 1092
BssNI GRCGYC 2 cut(s) 124, 155
BssT1I CCWWGG 2 cut(s) 205, 1092
Bst2UI CCWGG 2 cut(s) 849, 1077
Bst4CI ACNGT 1 cut(s) 726
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 2 cut(s) 124, 155
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 33, 411, 1170
BstDEI CTNAG 2 cut(s) 828, 1031
BstDSI CCRYGG 1 cut(s) 205
BstEII GGTNACC 1 cut(s) 839
BstENI CCTNNNNNAGG 1 cut(s) 1162
BstF5I GGATG 5 cut(s) 22, 481, 795, 844, 1150
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 136, 984
BstMCI CGRYCG 2 cut(s) 267, 893
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 2 cut(s) 849, 1077
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 2 cut(s) 847, 1075
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 7 cut(s) 76, 97, 139, 186, 387, 526, 824
BstYI RGATCY 7 cut(s) 76, 97, 139, 186, 387, 526, 824
BstZI CGGCCG 1 cut(s) 890
Bsu15I ATCGAT 1 cut(s) 373
BsuRI GGCC 5 cut(s) 41, 173, 193, 859, 892
BsuTUI ATCGAT 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 5 cut(s) 22, 481, 795, 844, 1150
Cac8I GCNNGC 3 cut(s) 33, 411, 1170
CfoI GCGC 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 4 cut(s) 40, 172, 668, 857
ClaI ATCGAT 1 cut(s) 373
CseI GACGC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 559, 923
CviAII CATG 4 cut(s) 206, 355, 470, 647
CviQI GTAC 2 cut(s) 559, 923
DdeI CTNAG 2 cut(s) 828, 1031
DinI GGCGCC 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 890
EagI CGGCCG 1 cut(s) 890
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EclXI CGGCCG 1 cut(s) 890
Eco130I CCWWGG 2 cut(s) 205, 1092
Eco24I GRGCYC 1 cut(s) 1155
Eco31I GGTCTC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 668
Eco52I CGGCCG 1 cut(s) 890
Eco91I GGTNACC 1 cut(s) 839
EcoNI CCTNNNNNAGG 1 cut(s) 1162
EcoO65I GGTNACC 1 cut(s) 839
EcoRII CCWGG 2 cut(s) 847, 1075
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 205, 1092
EcoT38I GRGCYC 1 cut(s) 1155
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 205, 1092
FaeI CATG 4 cut(s) 209, 358, 473, 650
FaqI GGGAC 2 cut(s) 344, 522
FatI CATG 4 cut(s) 205, 354, 469, 646
Fnu4HI GCNGC 4 cut(s) 36, 39, 158, 893
FokI GGATG 5 cut(s) 29, 488, 802, 831, 1157
FriOI GRGCYC 1 cut(s) 1155
Fsp4HI GCNGC 4 cut(s) 36, 39, 158, 893
FspBI CTAG 1 cut(s) 1044
GlaI GCGC 1 cut(s) 156
GluI GCNGC 4 cut(s) 36, 39, 158, 893
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 735
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 5 cut(s) 41, 173, 193, 859, 892
HapII CCGG 1 cut(s) 410
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 157
Hin1I GRCGYC 2 cut(s) 124, 155
Hin1II CATG 4 cut(s) 209, 358, 473, 650
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HindIII AAGCTT 2 cut(s) 29, 813
HinfI GANTC 7 cut(s) 364, 370, 749, 884, 1010, 1037, 1088
HpaII CCGG 1 cut(s) 410
HphI GGTGA 8 cut(s) 226, 359, 373, 758, 792, 851, 974, 980
Hpy166II GTNNAC 2 cut(s) 224, 722
Hpy188I TCNGA 7 cut(s) 144, 182, 264, 369, 398, 783, 1009
Hpy188III TCNNGA 4 cut(s) 391, 714, 1044, 1085
Hpy8I GTNNAC 2 cut(s) 224, 722
HpyAV CCTTC 4 cut(s) 433, 502, 551, 866
HpyCH4III ACNGT 1 cut(s) 726
HpyCH4V TGCA 1 cut(s) 1172
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 828, 1031
Hsp92I GRCGYC 2 cut(s) 124, 155
Hsp92II CATG 4 cut(s) 209, 358, 473, 650
HspAI GCGC 1 cut(s) 155
KasI GGCGCC 1 cut(s) 154
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
LmnI GCTCC 2 cut(s) 1078, 1158
Lsp1109I GCAGC 1 cut(s) 22
MaeI CTAG 1 cut(s) 1044
MaeIII GTNAC 5 cut(s) 19, 361, 703, 839, 1034
MboII GAAGA 3 cut(s) 238, 889, 1000
MflI RGATCY 7 cut(s) 76, 97, 139, 186, 387, 526, 824
MhlI GDGCHC 1 cut(s) 1155
MluCI AATT 1 cut(s) 571
Mly113I GGCGCC 1 cut(s) 155
MlyI GAGTC 2 cut(s) 358, 1031
MmeI TCCRAC 4 cut(s) 125, 287, 849, 882
MroNI GCCGGC 1 cut(s) 409
MseI TTAA 2 cut(s) 258, 863
MslI CAYNNNNRTG 2 cut(s) 359, 474
MspA1I CMGCKG 2 cut(s) 83, 895
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 2 cut(s) 849, 1077
MvaI CCWGG 2 cut(s) 849, 1077
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 411
NarI GGCGCC 1 cut(s) 155
NcoI CCATGG 1 cut(s) 205
NgoMIV GCCGGC 1 cut(s) 409
NlaIII CATG 4 cut(s) 209, 358, 473, 650
NlaIV GGNNCC 6 cut(s) 78, 141, 156, 389, 1074, 1154
NmeAIII GCCGAG 2 cut(s) 526, 868
NmuCI GTSAC 4 cut(s) 19, 361, 839, 1034
NspV TTCGAA 1 cut(s) 26
PdiI GCCGGC 1 cut(s) 411
PfeI GAWTC 5 cut(s) 370, 749, 884, 1010, 1088
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 4 cut(s) 37, 40, 159, 894
PleI GAGTC 2 cut(s) 358, 1031
PluTI GGCGCC 1 cut(s) 158
PpsI GAGTC 2 cut(s) 358, 1031
PshBI ATTAAT 1 cut(s) 863
Psp6I CCWGG 2 cut(s) 847, 1075
PspEI GGTNACC 1 cut(s) 839
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 847, 1075
PspN4I GGNNCC 6 cut(s) 78, 141, 156, 389, 1074, 1154
PspPI GGNCC 4 cut(s) 40, 172, 668, 857
PsuI RGATCY 7 cut(s) 76, 97, 139, 186, 387, 526, 824
RsaI GTAC 2 cut(s) 560, 924
RsaNI GTAC 2 cut(s) 559, 923
RseI CAYNNNNRTG 2 cut(s) 359, 474
SaqAI TTAA 2 cut(s) 258, 863
SatI GCNGC 4 cut(s) 36, 39, 158, 893
Sau96I GGNCC 4 cut(s) 40, 172, 668, 857
SchI GAGTC 2 cut(s) 358, 1031
ScrFI CCNGG 2 cut(s) 849, 1077
SduI GDGCHC 1 cut(s) 1155
SfoI GGCGCC 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 1 cut(s) 668
SmiMI CAYNNNNRTG 2 cut(s) 359, 474
Sse9I AATT 1 cut(s) 571
SsiI CCGC 5 cut(s) 38, 83, 158, 250, 893
SspDI GGCGCC 1 cut(s) 154
SspMI CTAG 1 cut(s) 1044
StyD4I CCNGG 2 cut(s) 847, 1075
StyI CCWWGG 2 cut(s) 205, 1092
TaaI ACNGT 1 cut(s) 726
TaqI TCGA 3 cut(s) 26, 373, 1024
TaqII GACCGA 1 cut(s) 281
TasI AATT 1 cut(s) 571
TauI GCSGC 3 cut(s) 41, 160, 895
TfiI GAWTC 5 cut(s) 370, 749, 884, 1010, 1088
Tru1I TTAA 2 cut(s) 258, 863
Tru9I TTAA 2 cut(s) 258, 863
TseFI GTSAC 4 cut(s) 19, 361, 839, 1034
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 4 cut(s) 19, 361, 839, 1034
TspDTI ATGAA 4 cut(s) 161, 458, 492, 741
TspGWI ACGGA 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 668
VspI ATTAAT 1 cut(s) 863
XagI CCTNNNNNAGG 1 cut(s) 1162
XbaI TCTAGA 1 cut(s) 1043
XcmI CCANNNNNNNNNTGG 3 cut(s) 108, 681, 851
XspI CTAG 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.