AT1G15810

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001441
Physical Location & Seq
Forward (+)
5444220 .. 5446564
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15810.1

Sequence Viewer

Length: 1260 bp
ATGGCGCTTCATCTCGCCAGACGCCACCAAAGGTTACCATCAAACACATCTTTGATTCGATTTTTCTCCAATTCCTCATCGGACTCACCTCCCCAATTCACGAACGCACCGGTTGAAAAACCGTCTCAGTCACCATCTTCTCCGTCACCGTCAGACTCTTCTCCGATCTTCGACATCAAGAACACTCTGAAACTGAAATTACAGAACCAGCAGGAGCAAGGAAGGAAACCATTTGACAGATCCGATGCACAATCTCAGAATCGCGGATCGACTAGTTTCTCCCAAAACTTGGGGAAGAATCTCGCCAAGTTTCAGCGGAGATCCACCGTTCCACCTCCGAGGGATTCAGGCGGCGTACAGCCTCCGTCTTATATTTCCTTAGCGGGCCTCTATAAGCAGAGCGCTGCAACAAACTCATCGGATCCTAGAAATTCGAAAGCTCAGGGTTTCAATTCAAACACTGTAAGTGAAACTTTAAAGAATTTGAGGACGCAGATTAACACTTCAAACAACATGGGGAAGAGAGGAGGGGTTTTAGGAAGTTTCAAGAGCACTGTAGGTGAAGCATTGCCAAAATACCTGTTCGAAACACAAATGGATGAGAGTAAGGGAAGTGAAGGTGAAACAGAGGAGGCGATGACGGAGTTCTTAATGTTTTATAACGAAGAAGAATTAGGTGAGAAACTAAGGACGCTTAGGCCAGAAGGAGAGAAAAAAGAAGGATGGTTCTCATTGGAGGAGTTGAATCAGAGATTGGTTAAGCTAAGGCAAGTTGAAGAGAAAGAGGCACAATATCGGACTAAGAACTTTGCCCAACTCAGAAATGTTATTTCATCATTTAAGAATGAGAATTCTGAAGCTAGTTCCCAGCAGAATGTCGCCATTATGGGCCATCTCGGTGGTATCCCTGAATACAAGCTTCTTCCTCCAAAAGAGGATCTAGTTGACACTTATTTCCACCCAGATAACATGTCCTCTGCGGAGAAGATGAAAATTGAGCTCTCGAAAGTCAGGGAAGAGTTCAAGATGTCAGAATCAGACTGTGGTTCTGCACGTGTGCAAGTGGCACAACTCACTACTAAGATCAAGCATTTATCCTCAAGTTTGCACAAAAAGGACAAGCATTCGCGGAAGGGACTTTTAGGAATGGTGCAGAAACGGAAGAAACTGTTGAAATATCTAAGACGAACTGACTGGGATTCTTACTGCCTTGTCCTGTCAAAACTCAGCCTTCGTGACAACCCGGATTACAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

419

Amino Acids

47.33

Weight (kDa)

9.54

Isoelectric Point (pI)

57.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 336 - 412 5.8e-24 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 289
AccII CGCG 2 cut(s) 264, 1129
AciI CCGC 6 cut(s) 264, 316, 351, 383, 980, 1129
AclWI GGATC 6 cut(s) 234, 274, 315, 416, 429, 945
AcsI RAATTY 3 cut(s) 430, 481, 850
AcuI CTGAAG 1 cut(s) 876
AcvI CACGTG 1 cut(s) 1055
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 1 cut(s) 357
AfeI AGCGCT 1 cut(s) 403
AfiI CCNNNNNNNGG 1 cut(s) 289
AflIII ACRYGT 2 cut(s) 969, 1054
AgeI ACCGGT 1 cut(s) 109
AgsI TTSAA 9 cut(s) 116, 451, 456, 507, 547, 745, 776, 1024, 1174
AhlI ACTAGT 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AluBI AGCT 5 cut(s) 440, 763, 860, 919, 1000
AluI AGCT 5 cut(s) 440, 763, 860, 919, 1000
Alw21I GWGCWC 2 cut(s) 554, 1002
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 6 cut(s) 234, 274, 315, 416, 429, 945
Aor51HI AGCGCT 1 cut(s) 403
AoxI GGCC 3 cut(s) 385, 698, 889
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 3 cut(s) 430, 481, 850
AsiGI ACCGGT 1 cut(s) 109
AspLEI GCGC 2 cut(s) 7, 404
AspS9I GGNCC 2 cut(s) 385, 889
AsuC2I CCSGG 1 cut(s) 1244
AsuHPI GGTGA 6 cut(s) 78, 123, 138, 572, 632, 689
AsuII TTCGAA 2 cut(s) 434, 585
BamHI GGATCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 1002
BbrPI CACGTG 1 cut(s) 1055
Bbv12I GWGCWC 2 cut(s) 554, 1002
BbvI GCAGC 1 cut(s) 391
BccI CCATC 4 cut(s) 46, 142, 717, 900
BciVI GTATCC 1 cut(s) 914
BcnI CCSGG 1 cut(s) 1244
BcoDI GTCTC 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 4 cut(s) 273, 426, 861, 941
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 2 cut(s) 8, 405
BfuI GTATCC 1 cut(s) 914
BisI GCNGC 2 cut(s) 352, 405
BlsI GCNGC 2 cut(s) 353, 406
Bme1390I CCNGG 1 cut(s) 1244
BmgT120I GGNCC 2 cut(s) 385, 889
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 1244
BmrI ACTGGG 1 cut(s) 1204
BmsI GCATC 1 cut(s) 235
BmuI ACTGGG 1 cut(s) 1204
Bpu10I CCTNAGC 4 cut(s) 379, 441, 695, 764
Bpu14I TTCGAA 2 cut(s) 434, 585
BpuEI CTTGAG 1 cut(s) 1084
BpuMI CCSGG 1 cut(s) 1244
BsaAI YACGTR 1 cut(s) 1055
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 338
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 1199
Bse3DI GCAATG 1 cut(s) 566
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 2 cut(s) 604, 728
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 5 cut(s) 140, 269, 455, 832, 1240
BseNI ACTGG 1 cut(s) 1199
BseRI GAGGAG 3 cut(s) 540, 644, 752
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 867
BsgI GTGCAG 2 cut(s) 1035, 1172
Bsh1236I CGCG 2 cut(s) 264, 1129
BshFI GGCC 3 cut(s) 387, 700, 891
BshTI ACCGGT 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 554, 1002
BsiSI CCGG 2 cut(s) 110, 1244
BslFI GGGAC 1 cut(s) 1149
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 1149
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 3 cut(s) 387, 700, 891
Bsp119I TTCGAA 2 cut(s) 434, 585
Bsp1286I GDGCHC 2 cut(s) 554, 1002
Bsp143I GATC 7 cut(s) 165, 239, 266, 320, 421, 937, 1083
BspACI CCGC 6 cut(s) 264, 316, 351, 383, 980, 1129
BspANI GGCC 3 cut(s) 387, 700, 891
BspCNI CTCAG 5 cut(s) 139, 268, 454, 831, 1239
BspFNI CGCG 2 cut(s) 264, 1129
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 6 cut(s) 234, 274, 315, 416, 429, 945
BspT104I TTCGAA 2 cut(s) 434, 585
BsrDI GCAATG 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 1 cut(s) 1199
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 7 cut(s) 165, 239, 266, 320, 421, 937, 1083
BssNI GRCGYC 1 cut(s) 22
Bst4CI ACNGT 7 cut(s) 123, 150, 328, 463, 556, 1043, 1170
Bst6I CTCTTC 4 cut(s) 163, 515, 771, 1011
BstACI GRCGYC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 1055
BstBI TTCGAA 2 cut(s) 434, 585
BstC8I GCNNGC 1 cut(s) 385
BstEII GGTNACC 1 cut(s) 33
BstF5I GGATG 2 cut(s) 604, 728
BstFNI CGCG 2 cut(s) 264, 1129
BstH2I RGCGCY 2 cut(s) 8, 405
BstHHI GCGC 2 cut(s) 7, 404
BstKTI GATC 7 cut(s) 168, 242, 269, 323, 424, 940, 1086
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 7 cut(s) 165, 239, 266, 320, 421, 937, 1083
BstNSI RCATGY 1 cut(s) 973
BstPI GGTNACC 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 1242
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 2 cut(s) 264, 1129
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 4 cut(s) 239, 320, 421, 937
BstXI CCANNNNNNTGG 1 cut(s) 899
BstYI RGATCY 4 cut(s) 239, 320, 421, 937
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 3 cut(s) 387, 700, 891
BtgZI GCGATG 1 cut(s) 650
BtsCI GGATG 2 cut(s) 604, 728
BtsIMutI CAGTG 2 cut(s) 459, 552
Cac8I GCNNGC 1 cut(s) 385
CfoI GCGC 2 cut(s) 7, 404
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 385, 889
CseI GACGC 3 cut(s) 30, 499, 700
Csp6I GTAC 1 cut(s) 356
CspAI ACCGGT 1 cut(s) 109
CviAII CATG 2 cut(s) 514, 970
CviQI GTAC 1 cut(s) 356
DpnI GATC 7 cut(s) 167, 241, 268, 322, 423, 939, 1085
DpnII GATC 7 cut(s) 165, 239, 266, 320, 421, 937, 1083
DraI TTTAAA 1 cut(s) 477
Eam1104I CTCTTC 4 cut(s) 163, 515, 771, 1011
EarI CTCTTC 4 cut(s) 163, 515, 771, 1011
Ecl136II GAGCTC 1 cut(s) 1000
Eco24I GRGCYC 1 cut(s) 1002
Eco47III AGCGCT 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 1000
Eco57I CTGAAG 1 cut(s) 876
Eco72I CACGTG 1 cut(s) 1055
Eco91I GGTNACC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 1000
EcoO65I GGTNACC 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 850
EcoT38I GRGCYC 1 cut(s) 1002
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 2 cut(s) 517, 973
FaiI YATR 6 cut(s) 372, 393, 515, 660, 887, 971
FalI AAGNNNNNCTT 2 cut(s) 457, 489
FaqI GGGAC 1 cut(s) 1149
FatI CATG 2 cut(s) 513, 969
FauI CCCGC 1 cut(s) 376
Fnu4HI GCNGC 2 cut(s) 352, 405
FokI GGATG 2 cut(s) 611, 735
FriOI GRGCYC 1 cut(s) 1002
Fsp4HI GCNGC 2 cut(s) 352, 405
FspBI CTAG 4 cut(s) 273, 426, 861, 941
GlaI GCGC 2 cut(s) 6, 403
GluI GCNGC 2 cut(s) 352, 405
GsaI CCCAGC 1 cut(s) 871
HaeII RGCGCY 2 cut(s) 8, 405
HaeIII GGCC 3 cut(s) 387, 700, 891
HapII CCGG 2 cut(s) 110, 1244
HgaI GACGC 3 cut(s) 30, 499, 700
HhaI GCGC 2 cut(s) 7, 404
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 2 cut(s) 517, 973
Hin6I GCGC 2 cut(s) 5, 402
HinP1I GCGC 2 cut(s) 5, 402
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 9 cut(s) 55, 83, 155, 259, 298, 344, 745, 1034, 1199
HpaII CCGG 2 cut(s) 110, 1244
HphI GGTGA 6 cut(s) 78, 123, 138, 572, 632, 689
Hpy166II GTNNAC 1 cut(s) 946
Hpy188III TCNNGA 6 cut(s) 100, 178, 547, 1003, 1024, 1235
Hpy8I GTNNAC 1 cut(s) 946
HpyAV CCTTC 6 cut(s) 216, 611, 698, 713, 1126, 1241
HpyCH4III ACNGT 7 cut(s) 123, 150, 328, 463, 556, 1043, 1170
HpyCH4IV ACGT 1 cut(s) 1054
HpyCH4V TGCA 6 cut(s) 248, 407, 1052, 1060, 1108, 1153
HpySE526I ACGT 1 cut(s) 1054
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 2 cut(s) 517, 973
HspAI GCGC 2 cut(s) 5, 402
Kzo9I GATC 7 cut(s) 165, 239, 266, 320, 421, 937, 1083
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 235
MaeI CTAG 4 cut(s) 273, 426, 861, 941
MaeII ACGT 1 cut(s) 1054
MaeIII GTNAC 4 cut(s) 33, 129, 144, 1235
MalI GATC 7 cut(s) 167, 241, 268, 322, 423, 939, 1085
MboI GATC 7 cut(s) 165, 239, 266, 320, 421, 937, 1083
MflI RGATCY 4 cut(s) 239, 320, 421, 937
MhlI GDGCHC 2 cut(s) 554, 1002
MluCI AATT 9 cut(s) 70, 95, 197, 430, 451, 481, 671, 850, 993
MlyI GAGTC 2 cut(s) 77, 149
MseI TTAA 5 cut(s) 476, 498, 650, 759, 840
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 2 cut(s) 110, 1244
MspR9I CCNGG 1 cut(s) 1244
Mva1269I GAATGC 1 cut(s) 1123
MvnI CGCG 2 cut(s) 264, 1129
NciI CCSGG 1 cut(s) 1244
NdeII GATC 7 cut(s) 165, 239, 266, 320, 421, 937, 1083
NlaIII CATG 2 cut(s) 517, 973
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 3 cut(s) 129, 144, 1235
NspI RCATGY 1 cut(s) 973
NspV TTCGAA 2 cut(s) 434, 585
PciI ACATGT 1 cut(s) 969
PctI GAATGC 1 cut(s) 1123
PfeI GAWTC 7 cut(s) 55, 259, 298, 344, 745, 1034, 1199
PflMI CCANNNNNTGG 1 cut(s) 289
PinAI ACCGGT 1 cut(s) 109
PkrI GCNGC 2 cut(s) 353, 406
PleI GAGTC 2 cut(s) 77, 149
PmaCI CACGTG 1 cut(s) 1055
PmlI CACGTG 1 cut(s) 1055
PpsI GAGTC 2 cut(s) 77, 149
Ppu21I YACGTR 1 cut(s) 1055
PscI ACATGT 1 cut(s) 969
PsiI TTATAA 1 cut(s) 660
Psp124BI GAGCTC 1 cut(s) 1002
PspCI CACGTG 1 cut(s) 1055
PspEI GGTNACC 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 867
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 2 cut(s) 385, 889
PsuI RGATCY 4 cut(s) 239, 320, 421, 937
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 897
SacI GAGCTC 1 cut(s) 1002
SaqAI TTAA 5 cut(s) 476, 498, 650, 759, 840
SatI GCNGC 2 cut(s) 352, 405
Sau3AI GATC 7 cut(s) 165, 239, 266, 320, 421, 937, 1083
Sau96I GGNCC 2 cut(s) 385, 889
SchI GAGTC 2 cut(s) 77, 149
ScrFI CCNGG 1 cut(s) 1244
SduI GDGCHC 2 cut(s) 554, 1002
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 555
SfuI TTCGAA 2 cut(s) 434, 585
SmiMI CAYNNNNRTG 1 cut(s) 897
SmlI CTYRAG 1 cut(s) 1099
SmoI CTYRAG 1 cut(s) 1099
SpeI ACTAGT 1 cut(s) 272
Sse9I AATT 9 cut(s) 70, 95, 197, 430, 451, 481, 671, 850, 993
SsiI CCGC 6 cut(s) 264, 316, 351, 383, 980, 1129
SspMI CTAG 4 cut(s) 273, 426, 861, 941
SstI GAGCTC 1 cut(s) 1002
StyD4I CCNGG 1 cut(s) 1242
TaaI ACNGT 7 cut(s) 123, 150, 328, 463, 556, 1043, 1170
TaiI ACGT 1 cut(s) 1057
TaqI TCGA 6 cut(s) 58, 171, 269, 434, 585, 1004
TasI AATT 9 cut(s) 70, 95, 197, 430, 451, 481, 671, 850, 993
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 7 cut(s) 55, 259, 298, 344, 745, 1034, 1199
Tru1I TTAA 5 cut(s) 476, 498, 650, 759, 840
Tru9I TTAA 5 cut(s) 476, 498, 650, 759, 840
TscAI CASTG 2 cut(s) 466, 559
TseFI GTSAC 3 cut(s) 129, 144, 1235
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 3 cut(s) 129, 144, 1235
TspDTI ATGAA 2 cut(s) 822, 1004
TspGWI ACGGA 4 cut(s) 132, 354, 656, 1174
TspRI CASTG 2 cut(s) 466, 559
Van91I CCANNNNNTGG 1 cut(s) 289
XapI RAATTY 3 cut(s) 430, 481, 850
XceI RCATGY 1 cut(s) 973
XspI CTAG 4 cut(s) 273, 426, 861, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.