Prupe.3G095300_v2.0.a1

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001441
Physical Location & Seq
Forward (+)
7142821 .. 7148294
5474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G095300.1

Sequence Viewer

Length: 1368 bp
ATGACTCTCCAACTGAGAGCCAGACACCGAACTCTAACAAAACCACCTCTCACTCACCTCTTCTCCACCACCACCTCCTCAGACCCATCCGACCCAAAAGACCCAAAAGACCCAACAGACCCAAATCCCCAATCTCACTCTTCCTCGCTCACATCCTATTTCAGCGATGTCAAAGCCAGCCTCAAACAACAACAACAACAACCACAACAACAGAGGAGACCCATTTCTCAAAATCCCTCATTTTCGAACCATCCTCTGTCCAGGACCTCCGGAGCGGCTTCCTTGGAAGAAATCCGCAAAAACCTCTCGGAGTTTCGGCGGCGATCCGCTGTGCCGGAACCCACAGACTCAAACTCTGCACCTTCACAGCAATCTTCAACAGCTCAAGGTTCTACACAGCAAGTCTCTTTTCAAGAGCTTTATAACAGAAATGTGCTTGGCAAGTCTGAGGACCCCAATGCCGATAAGGGTGGGAAGCTCTCTTTCAATGCGATCCGAGAGAGCTTGAAGAAGATAAAGTCGAATACCAATGTGCAAAGTGATAGGAAGAGTGTGGACCCTATGTCCTTATCGGCATTTACCAATAGTTTGAAGCTCAAGCCGAATGTGATCGGTGGGACTGACACTTTGCCGATGTCGATTTTTGGGAAGGAGAAGATAAAGGGGAGAAATGAAGAAGAGGGCTCGTATGCAATGAAAACAGATTTTGTGAAGTTGTATGACCATGCAGAGCTGGGGGAGAAGTTGAGGAGGTTGAGGCCGGAGGCCAAGGGGGACAGCTGGTTTTCATTGAAGGAGTTAAATGAGAGGTTGATGAAGTTGAGGGAGATGGAAGAGATGGAGACTCAGGCGGCTATGAGCGGCGTTTCGTTTAGGGATTTGAGGGATAGCTTGGTGAAATTGAAGATTTCGGATGAGGAGAAGGTGAAGAAAACTTCGATCCAGAGGCTTGATATCTTGGGCCAGTTCGGCCGAACTCCTAGCTTTATGCTGCAACCTCCCAAGGAACACTTGGTTGAAAAGTATTTCCATCCAGATAACATGTCTTCTGCAGAAAAACTGAAAATTGAGCTTGCCAAAGTTAGAGAAGAATTTAAAATGTCAGAGTCCGATTGTGGTTCTGCACGAGTTCAAGTGGCACAGCTCACAACCAAGATCAAACATCTATCTTCAGTTTTACACAAAAAGGATAAGCATTCCCGTAAGGGTCTTCAAGCGATGTTGCAGAGAAGGAAGAGGTTATTGAAGTATCTTCGAAAAACTGACTGGGATTCTTACTGCTTTGTTCTCTCTAAACTTGGTCTCCGGGACAAGCCAGAGTTTCTCTCTAAACTTGGTCTCCGGTACAAGACAGATAACAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

456

Amino Acids

51.79

Weight (kDa)

9.8

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AccBSI CCGCTC 2 cut(s) 275, 861
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 6 cut(s) 275, 295, 319, 327, 851, 861
AclWI GGATC 3 cut(s) 318, 487, 934
AcoI YGGCCR 1 cut(s) 970
AcsI RAATTY 1 cut(s) 1091
AcuI CTGAAG 1 cut(s) 1155
AfaI GTAC 1 cut(s) 1346
AflIII ACRYGT 1 cut(s) 1041
AhdI GACNNNNNGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 260
Alw26I GTCTC 5 cut(s) 211, 409, 836, 1307, 1343
AlwI GGATC 3 cut(s) 318, 487, 934
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 4 cut(s) 758, 765, 961, 970
ApeKI GCWGC 1 cut(s) 991
ApoI RAATTY 1 cut(s) 1091
ArsI GACNNNNNNTTYG 2 cut(s) 610, 642
AspS9I GGNCC 4 cut(s) 264, 451, 556, 961
AsuC2I CCSGG 1 cut(s) 1307
AsuHPI GGTGA 3 cut(s) 47, 907, 937
AsuII TTCGAA 2 cut(s) 245, 1255
AvaII GGWCC 3 cut(s) 264, 451, 556
BanII GRGCYC 1 cut(s) 686
BauI CACGAG 1 cut(s) 1125
BbsI GAAGAC 2 cut(s) 1038, 1202
BbvI GCAGC 1 cut(s) 978
BccI CCATC 5 cut(s) 94, 258, 823, 832, 1038
BciT130I CCWGG 1 cut(s) 262
BcnI CCSGG 1 cut(s) 1307
BcoDI GTCTC 5 cut(s) 211, 409, 836, 1307, 1343
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 1 cut(s) 1050
BglI GCCNNNNNGGC 1 cut(s) 969
BisI GCNGC 5 cut(s) 276, 320, 852, 862, 992
BlsI GCNGC 5 cut(s) 277, 321, 853, 863, 993
Bme1390I CCNGG 2 cut(s) 262, 1307
Bme18I GGWCC 3 cut(s) 264, 451, 556
BmeRI GACNNNNNGTC 1 cut(s) 562
BmgT120I GGNCC 4 cut(s) 264, 451, 556, 961
BmiI GGNNCC 3 cut(s) 339, 453, 558
BmrFI CCNGG 2 cut(s) 262, 1307
BmrI ACTGGG 1 cut(s) 1276
BmuI ACTGGG 1 cut(s) 1276
BpiI GAAGAC 2 cut(s) 1038, 1202
BplI GAGNNNNNCTC 2 cut(s) 1310, 1342
Bpu14I TTCGAA 2 cut(s) 245, 1255
BpuEI CTTGAG 2 cut(s) 369, 581
BpuMI CCSGG 1 cut(s) 1307
BsaI GGTCTC 3 cut(s) 211, 1307, 1343
BsaJI CCNNGG 3 cut(s) 282, 768, 1002
BsaWI WCCGGW 2 cut(s) 269, 1341
BsaXI ACNNNNNCTCC 6 cut(s) 47, 77, 1287, 1317, 1323, 1353
Bse1I ACTGG 2 cut(s) 964, 1271
Bse3DI GCAATG 1 cut(s) 699
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 282, 768, 1002
BseGI GGATG 5 cut(s) 86, 152, 250, 919, 1030
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 4 cut(s) 5, 93, 438, 860
BseNI ACTGG 2 cut(s) 964, 1271
BseRI GAGGAG 4 cut(s) 67, 229, 763, 932
BseX3I CGGCCG 1 cut(s) 970
BseXI GCAGC 1 cut(s) 978
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 2 cut(s) 342, 1107
Bsh1285I CGRYCG 1 cut(s) 973
BshFI GGCC 4 cut(s) 760, 767, 963, 972
BsiEI CGRYCG 1 cut(s) 973
BsiSI CCGG 5 cut(s) 270, 335, 761, 1306, 1342
BslFI GGGAC 3 cut(s) 631, 788, 1322
BsmAI GTCTC 5 cut(s) 211, 409, 836, 1307, 1343
BsmFI GGGAC 3 cut(s) 631, 788, 1322
BsmI GAATGC 1 cut(s) 1195
BsnI GGCC 4 cut(s) 760, 767, 963, 972
Bso31I GGTCTC 3 cut(s) 211, 1307, 1343
Bsp119I TTCGAA 2 cut(s) 245, 1255
Bsp1286I GDGCHC 1 cut(s) 686
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 5 cut(s) 323, 492, 609, 939, 1155
BspACI CCGC 6 cut(s) 275, 295, 319, 327, 851, 861
BspANI GGCC 4 cut(s) 760, 767, 963, 972
BspCNI CTCAG 4 cut(s) 6, 92, 439, 859
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 339, 453, 558
BspMAI CTGCAG 1 cut(s) 1054
BspPI GGATC 3 cut(s) 318, 487, 934
BspT104I TTCGAA 2 cut(s) 245, 1255
BspTNI GGTCTC 3 cut(s) 211, 1307, 1343
BsrBI CCGCTC 2 cut(s) 275, 861
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 2 cut(s) 964, 1271
BssECI CCNNGG 3 cut(s) 282, 768, 1002
BssMI GATC 5 cut(s) 323, 492, 609, 939, 1155
BssSI CACGAG 1 cut(s) 1125
BssT1I CCWWGG 3 cut(s) 282, 768, 1002
Bst2BI CACGAG 1 cut(s) 1125
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 6 cut(s) 65, 145, 542, 672, 828, 1229
BstBI TTCGAA 2 cut(s) 245, 1255
BstC8I GCNNGC 2 cut(s) 178, 1074
BstDEI CTNAG 4 cut(s) 14, 79, 447, 846
BstF5I GGATG 5 cut(s) 86, 152, 250, 919, 1030
BstKTI GATC 5 cut(s) 326, 495, 612, 942, 1158
BstMAI GTCTC 5 cut(s) 211, 409, 836, 1307, 1343
BstMBI GATC 5 cut(s) 323, 492, 609, 939, 1155
BstMCI CGRYCG 1 cut(s) 973
BstMWI GCNNNNNNNGC 1 cut(s) 969
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 1045
BstSCI CCNGG 2 cut(s) 260, 1305
BstSFI CTRYAG 1 cut(s) 1050
BstV1I GCAGC 1 cut(s) 978
BstV2I GAAGAC 2 cut(s) 1038, 1202
BstZI CGGCCG 1 cut(s) 970
BsuRI GGCC 4 cut(s) 760, 767, 963, 972
BtgZI GCGATG 2 cut(s) 180, 1232
BtsCI GGATG 5 cut(s) 86, 152, 250, 919, 1030
Cac8I GCNNGC 2 cut(s) 178, 1074
Cfr13I GGNCC 4 cut(s) 264, 451, 556, 961
Csp6I GTAC 1 cut(s) 1345
CviAII CATG 2 cut(s) 725, 1042
CviQI GTAC 1 cut(s) 1345
DdeI CTNAG 4 cut(s) 14, 79, 447, 846
DpnI GATC 5 cut(s) 325, 494, 611, 941, 1157
DpnII GATC 5 cut(s) 323, 492, 609, 939, 1155
DraI TTTAAA 1 cut(s) 1096
DriI GACNNNNNGTC 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 970
EagI CGGCCG 1 cut(s) 970
Eam1104I CTCTTC 6 cut(s) 65, 145, 542, 672, 828, 1229
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 6 cut(s) 65, 145, 542, 672, 828, 1229
EclXI CGGCCG 1 cut(s) 970
Eco130I CCWWGG 3 cut(s) 282, 768, 1002
Eco24I GRGCYC 1 cut(s) 686
Eco31I GGTCTC 3 cut(s) 211, 1307, 1343
Eco32I GATATC 1 cut(s) 955
Eco47I GGWCC 3 cut(s) 264, 451, 556
Eco52I CGGCCG 1 cut(s) 970
Eco57I CTGAAG 1 cut(s) 1155
EcoO109I RGGNCCY 2 cut(s) 264, 451
EcoRII CCWGG 1 cut(s) 260
EcoRV GATATC 1 cut(s) 955
EcoT14I CCWWGG 3 cut(s) 282, 768, 1002
EcoT38I GRGCYC 1 cut(s) 686
ErhI CCWWGG 3 cut(s) 282, 768, 1002
FaeI CATG 2 cut(s) 728, 1045
FaiI YATR 8 cut(s) 423, 563, 690, 720, 726, 857, 989, 1043
FalI AAGNNNNNCTT 2 cut(s) 995, 1027
FaqI GGGAC 3 cut(s) 631, 788, 1322
FatI CATG 2 cut(s) 724, 1041
Fnu4HI GCNGC 5 cut(s) 276, 320, 852, 862, 992
FokI GGATG 5 cut(s) 73, 139, 237, 926, 1017
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 5 cut(s) 276, 320, 852, 862, 992
FspBI CTAG 1 cut(s) 981
GluI GCNGC 5 cut(s) 276, 320, 852, 862, 992
GsaI CCCAGC 1 cut(s) 737
HaeIII GGCC 4 cut(s) 760, 767, 963, 972
HapII CCGG 5 cut(s) 270, 335, 761, 1306, 1342
Hin1II CATG 2 cut(s) 728, 1045
HinfI GANTC 5 cut(s) 4, 347, 844, 1106, 1271
HpaII CCGG 5 cut(s) 270, 335, 761, 1306, 1342
HphI GGTGA 3 cut(s) 47, 907, 937
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 8 cut(s) 82, 91, 310, 448, 497, 913, 1105, 1111
Hpy188III TCNNGA 4 cut(s) 270, 413, 943, 1034
Hpy8I GTNNAC 1 cut(s) 556
HpyAV CCTTC 5 cut(s) 372, 643, 787, 916, 1224
HpyCH4V TGCA 8 cut(s) 359, 535, 692, 728, 994, 1052, 1124, 1225
HpyF10VI GCNNNNNNNGC 1 cut(s) 969
HpyF3I CTNAG 4 cut(s) 14, 79, 447, 846
Hsp92II CATG 2 cut(s) 728, 1045
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 5 cut(s) 323, 492, 609, 939, 1155
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 1 cut(s) 978
MaeI CTAG 1 cut(s) 981
MalI GATC 5 cut(s) 325, 494, 611, 941, 1157
MbiI CCGCTC 2 cut(s) 275, 861
MboI GATC 5 cut(s) 323, 492, 609, 939, 1155
MhlI GDGCHC 1 cut(s) 686
MluCI AATT 3 cut(s) 899, 1065, 1091
MlyI GAGTC 3 cut(s) 341, 838, 1115
MmeI TCCRAC 2 cut(s) 34, 114
MroI TCCGGA 1 cut(s) 269
MseI TTAA 2 cut(s) 800, 1095
MspA1I CMGCKG 2 cut(s) 329, 780
MspI CCGG 5 cut(s) 270, 335, 761, 1306, 1342
MspR9I CCNGG 2 cut(s) 262, 1307
Mva1269I GAATGC 1 cut(s) 1195
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 969
NciI CCSGG 1 cut(s) 1307
NdeII GATC 5 cut(s) 323, 492, 609, 939, 1155
NlaIII CATG 2 cut(s) 728, 1045
NlaIV GGNNCC 3 cut(s) 339, 453, 558
NspI RCATGY 1 cut(s) 1045
NspV TTCGAA 2 cut(s) 245, 1255
PciI ACATGT 1 cut(s) 1041
PctI GAATGC 1 cut(s) 1195
PfeI GAWTC 1 cut(s) 1271
PfoI TCCNGGA 2 cut(s) 260, 1305
PkrI GCNGC 5 cut(s) 277, 321, 853, 863, 993
PleI GAGTC 3 cut(s) 341, 838, 1114
PpsI GAGTC 3 cut(s) 341, 838, 1114
PpuMI RGGWCCY 2 cut(s) 264, 451
PscI ACATGT 1 cut(s) 1041
PsiI TTATAA 1 cut(s) 423
Psp5II RGGWCCY 2 cut(s) 264, 451
Psp6I CCWGG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 339, 453, 558
PspPI GGNCC 4 cut(s) 264, 451, 556, 961
PspPPI RGGWCCY 2 cut(s) 264, 451
PstI CTGCAG 1 cut(s) 1054
PvuII CAGCTG 1 cut(s) 780
RsaI GTAC 1 cut(s) 1346
RsaNI GTAC 1 cut(s) 1345
SaqAI TTAA 2 cut(s) 800, 1095
SatI GCNGC 5 cut(s) 276, 320, 852, 862, 992
Sau3AI GATC 5 cut(s) 323, 492, 609, 939, 1155
Sau96I GGNCC 4 cut(s) 264, 451, 556, 961
SchI GAGTC 3 cut(s) 341, 838, 1115
ScrFI CCNGG 2 cut(s) 262, 1307
SduI GDGCHC 1 cut(s) 686
SfcI CTRYAG 1 cut(s) 1050
SfiI GGCCNNNNNGGCC 1 cut(s) 969
SfuI TTCGAA 2 cut(s) 245, 1255
SinI GGWCC 3 cut(s) 264, 451, 556
SmlI CTYRAG 2 cut(s) 384, 596
SmoI CTYRAG 2 cut(s) 384, 596
Sse9I AATT 3 cut(s) 899, 1065, 1091
SsiI CCGC 6 cut(s) 275, 295, 319, 327, 851, 861
SspMI CTAG 1 cut(s) 981
StyD4I CCNGG 2 cut(s) 260, 1305
StyI CCWWGG 3 cut(s) 282, 768, 1002
TaqI TCGA 5 cut(s) 245, 521, 638, 938, 1255
TasI AATT 3 cut(s) 899, 1065, 1091
TauI GCSGC 4 cut(s) 278, 322, 854, 864
TfiI GAWTC 1 cut(s) 1271
Tru1I TTAA 2 cut(s) 800, 1095
Tru9I TTAA 2 cut(s) 800, 1095
TseI GCWGC 1 cut(s) 991
TspDTI ATGAA 4 cut(s) 687, 710, 777, 830
VpaK11BI GGWCC 3 cut(s) 264, 451, 556
XapI RAATTY 1 cut(s) 1091
XceI RCATGY 1 cut(s) 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 1009
XspI CTAG 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.