Rh2BG371000

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001441
Physical Location & Seq
Reverse (-)
51858041 .. 51863576
5536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG371000.1

Sequence Viewer

Length: 1110 bp
ATGATGGCTCTCCGACTGAGAACCAACCACCGAACCCTCACAAACCCATCTCTCATTCACCTCTTCTCGACTTCCTCCCCAGACCCATCCGACTCAACCGACCCAACTGAACCCAACCCCCAGTCCGACTCCTCCTCTCTCTCCAATTACTTCAGCGATGTCAAAGCCAGCCTCAGGCAACAGTCACAGTCCCAGTCCCAGTCACAGCAACTACACTTCAGACCCACTTCTCAGAACAACAACCCTTCTCTCTCCCGGCCTTCCAAGGCTGCCTCTTTGGAGGAAATCCGCAAAAACCTTGCGGAGTTTCGGCTTCGATCCATTGGGCCAAACCCCACTGAATCAAACTCTGCACCTCCACCTCCACCTCCACCTCCGAACCCCATTTCGTTTGAGAAGCTCTATAACAAAGGCGTGAGCAGCCGCAAGATGGAGTTTCAGACGGTTCGGGAGAGTCTGAAGCTCATAAGGCCCAATGCGAATGAGCAGAATGAGAGGAAGGGTAGGGGATTGTCGTTGTTGAGGTCCAAAAGTTTGGATATGAATCCGAGCCAGGATGTGGGTGTTAGGAAGGGAGCACTTACAAGTTTGTTTGGTAAGGAGAAGGAGAGAAGTGGAGAGAAGAGCTTGGATGCATTGAAGACTGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGGAAGTTGAGGCCCGAGGAAGGGAAGGAAGGGGGCGGGTTTACATTGGGGGAGTTCAGTGAGAGGTTGGTCAAGTTGAGGAAGATGGAAGAGAATGAGTCCGAGTCTTGGGTTGGGGGATTGAATACTAACTTGACGCAGAGCTTGTTGAAGATAGCCGCGGAGGAGAAGCATAGGAAAACTCCGATGCAGAGGCTTCATATGATAGATATAGGTCAAACTCCTGATTATATGATGAAACCCCCAAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGCTAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAGTTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGGTATAGGTTTTGATATTGTATTGTACTACACCTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

369

Amino Acids

41.59

Weight (kDa)

9.43

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 559
AccII CGCG 1 cut(s) 851
AciI CCGC 6 cut(s) 289, 302, 424, 726, 849, 851
AclWI GGATC 1 cut(s) 312
AcuI CTGAAG 3 cut(s) 136, 202, 479
AfaI GTAC 1 cut(s) 1094
AfiI CCNNNNNNNGG 7 cut(s) 174, 430, 559, 710, 711, 798, 941
AflIII ACRYGT 1 cut(s) 975
AgsI TTSAA 4 cut(s) 640, 814, 841, 1067
AjnI CCWGG 1 cut(s) 552
AluBI AGCT 9 cut(s) 400, 463, 627, 666, 688, 834, 971, 994, 1006
AluI AGCT 9 cut(s) 400, 463, 627, 666, 688, 834, 971, 994, 1006
Alw21I GWGCWC 1 cut(s) 580
AlwI GGATC 1 cut(s) 312
Ama87I CYCGRG 1 cut(s) 704
AoxI GGCC 4 cut(s) 257, 326, 470, 701
ApeKI GCWGC 2 cut(s) 269, 420
Asp700I GAANNNNTTC 1 cut(s) 959
AspS9I GGNCC 4 cut(s) 326, 471, 525, 702
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 704
AvaII GGWCC 1 cut(s) 525
AxyI CCTNAGG 1 cut(s) 173
BauI CACGAG 1 cut(s) 1059
BbsI GAAGAC 2 cut(s) 647, 972
Bbv12I GWGCWC 1 cut(s) 580
BbvCI CCTCAGC 1 cut(s) 689
BbvI GCAGC 2 cut(s) 256, 432
BccI CCATC 5 cut(s) 55, 94, 424, 769, 972
BciT130I CCWGG 1 cut(s) 554
BcnI CCSGG 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 984
BisI GCNGC 4 cut(s) 270, 421, 424, 849
BlsI GCNGC 4 cut(s) 271, 422, 425, 850
Bme1390I CCNGG 2 cut(s) 256, 554
Bme18I GGWCC 1 cut(s) 525
BmeT110I CYCGRG 1 cut(s) 704
BmgT120I GGNCC 4 cut(s) 326, 471, 525, 702
BmrFI CCNGG 2 cut(s) 256, 554
BmrI ACTGGG 3 cut(s) 115, 187, 193
BmsI GCATC 2 cut(s) 622, 867
BmuI ACTGGG 3 cut(s) 115, 187, 193
BpiI GAAGAC 2 cut(s) 647, 972
Bpu10I CCTNAGC 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 264, 705, 849
Bsc4I CCNNNNNNNGG 7 cut(s) 174, 430, 559, 710, 711, 798, 941
Bse1I ACTGG 3 cut(s) 121, 193, 199
Bse21I CCTNAGG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 3 cut(s) 264, 705, 849
BseGI GGATG 4 cut(s) 86, 562, 637, 964
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 7 cut(s) 174, 430, 559, 710, 711, 798, 941
BseMII CTCAG 5 cut(s) 8, 187, 245, 636, 680
BseNI ACTGG 3 cut(s) 121, 193, 199
BseRI GAGGAG 3 cut(s) 121, 124, 869
BseXI GCAGC 2 cut(s) 256, 432
BsgI GTGCAG 2 cut(s) 336, 1041
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 4 cut(s) 259, 328, 472, 703
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 704
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 2 cut(s) 175, 181
BslI CCNNNNNNNGG 7 cut(s) 174, 430, 559, 710, 711, 798, 941
BsmFI GGGAC 2 cut(s) 175, 181
BsnI GGCC 4 cut(s) 259, 328, 472, 703
BsoBI CYCGRG 1 cut(s) 704
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 1 cut(s) 317
BspACI CCGC 6 cut(s) 289, 302, 424, 726, 849, 851
BspANI GGCC 4 cut(s) 259, 328, 472, 703
BspCNI CTCAG 5 cut(s) 9, 186, 244, 637, 681
BspFNI CGCG 1 cut(s) 851
BspMAI CTGCAG 1 cut(s) 988
BspPI GGATC 1 cut(s) 312
BspQI GCTCTTC 1 cut(s) 617
BsrI ACTGG 3 cut(s) 121, 193, 199
BssECI CCNNGG 3 cut(s) 264, 705, 849
BssMI GATC 1 cut(s) 317
BssSI CACGAG 1 cut(s) 1059
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 1059
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 183, 189, 445
Bst6I CTCTTC 3 cut(s) 68, 617, 774
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 5 cut(s) 17, 173, 231, 645, 689
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 4 cut(s) 86, 562, 637, 964
BstFNI CGCG 1 cut(s) 851
BstKTI GATC 1 cut(s) 320
BstMBI GATC 1 cut(s) 317
BstMWI GCNNNNNNNGC 2 cut(s) 420, 469
BstNI CCWGG 1 cut(s) 554
BstNSI RCATGY 1 cut(s) 979
BstSCI CCNGG 2 cut(s) 254, 552
BstSFI CTRYAG 1 cut(s) 984
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 2 cut(s) 256, 432
BstV2I GAAGAC 2 cut(s) 647, 972
BstXI CCANNNNNNTGG 1 cut(s) 535
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 4 cut(s) 259, 328, 472, 703
BtgI CCRYGG 1 cut(s) 849
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 4 cut(s) 86, 562, 637, 964
BtsIMutI CAGTG 2 cut(s) 336, 754
Cac8I GCNNGC 1 cut(s) 169
Cfr13I GGNCC 4 cut(s) 326, 471, 525, 702
Cfr42I CCGCGG 1 cut(s) 852
CseI GACGC 1 cut(s) 835
Csp6I GTAC 1 cut(s) 1093
CviAII CATG 1 cut(s) 976
CviQI GTAC 1 cut(s) 1093
DdeI CTNAG 5 cut(s) 17, 173, 231, 645, 689
DpnI GATC 1 cut(s) 319
DpnII GATC 1 cut(s) 317
DraI TTTAAA 1 cut(s) 1030
Eam1104I CTCTTC 3 cut(s) 68, 617, 774
EarI CTCTTC 3 cut(s) 68, 617, 774
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 525
Eco57I CTGAAG 3 cut(s) 136, 202, 479
Eco81I CCTNAGG 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 704
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 979
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FaqI GGGAC 2 cut(s) 175, 181
FatI CATG 1 cut(s) 975
FauI CCCGC 1 cut(s) 719
FauNDI CATATG 1 cut(s) 891
Fnu4HI GCNGC 4 cut(s) 270, 421, 424, 849
FokI GGATG 4 cut(s) 73, 569, 644, 951
Fsp4HI GCNGC 4 cut(s) 270, 421, 424, 849
GluI GCNGC 4 cut(s) 270, 421, 424, 849
HaeIII GGCC 4 cut(s) 259, 328, 472, 703
HapII CCGG 1 cut(s) 256
HgaI GACGC 1 cut(s) 835
Hin1II CATG 1 cut(s) 979
HinfI GANTC 8 cut(s) 92, 128, 341, 454, 544, 788, 794, 1040
HpaII CCGG 1 cut(s) 256
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 732
Hpy188III TCNNGA 3 cut(s) 67, 449, 914
Hpy8I GTNNAC 1 cut(s) 732
HpyAV CCTTC 9 cut(s) 255, 270, 493, 565, 598, 704, 709, 713, 935
HpyCH4III ACNGT 3 cut(s) 183, 189, 445
HpyCH4V TGCA 5 cut(s) 353, 635, 880, 986, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 420, 469
HpyF3I CTNAG 5 cut(s) 17, 173, 231, 645, 689
Hsp92II CATG 1 cut(s) 979
KspI CCGCGG 1 cut(s) 852
Kzo9I GATC 1 cut(s) 317
LguI GCTCTTC 1 cut(s) 617
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 2 cut(s) 256, 432
LweI GCATC 2 cut(s) 622, 867
MaeIII GTNAC 2 cut(s) 183, 201
MalI GATC 1 cut(s) 319
MboI GATC 1 cut(s) 317
MboII GAAGA 8 cut(s) 55, 634, 652, 667, 784, 791, 853, 972
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 2 cut(s) 145, 999
MlyI GAGTC 6 cut(s) 86, 122, 463, 797, 803, 1049
MmeI TCCRAC 3 cut(s) 37, 114, 150
Mph1103I ATGCAT 1 cut(s) 637
MroXI GAANNNNTTC 1 cut(s) 959
MseI TTAA 2 cut(s) 1029, 1108
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 2 cut(s) 256, 554
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 2 cut(s) 420, 469
NciI CCSGG 1 cut(s) 256
NdeI CATATG 1 cut(s) 891
NdeII GATC 1 cut(s) 317
NlaIII CATG 1 cut(s) 979
NmuCI GTSAC 2 cut(s) 183, 201
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 1 cut(s) 979
PciI ACATGT 1 cut(s) 975
PciSI GCTCTTC 1 cut(s) 617
PdmI GAANNNNTTC 1 cut(s) 959
PfeI GAWTC 2 cut(s) 341, 544
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 4 cut(s) 271, 422, 425, 850
PleI GAGTC 6 cut(s) 86, 122, 462, 796, 802, 1048
PpsI GAGTC 6 cut(s) 86, 122, 462, 796, 802, 1048
PscI ACATGT 1 cut(s) 975
Psp6I CCWGG 1 cut(s) 552
PspGI CCWGG 1 cut(s) 552
PspPI GGNCC 4 cut(s) 326, 471, 525, 702
PstI CTGCAG 1 cut(s) 988
RsaI GTAC 1 cut(s) 1094
RsaNI GTAC 1 cut(s) 1093
SacII CCGCGG 1 cut(s) 852
SapI GCTCTTC 1 cut(s) 617
SaqAI TTAA 2 cut(s) 1029, 1108
SatI GCNGC 4 cut(s) 270, 421, 424, 849
Sau3AI GATC 1 cut(s) 317
Sau96I GGNCC 4 cut(s) 326, 471, 525, 702
SchI GAGTC 6 cut(s) 86, 122, 463, 797, 803, 1049
ScrFI CCNGG 2 cut(s) 256, 554
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 2 cut(s) 622, 867
SfcI CTRYAG 1 cut(s) 984
Sfr303I CCGCGG 1 cut(s) 852
SgrBI CCGCGG 1 cut(s) 852
SinI GGWCC 1 cut(s) 525
Sse9I AATT 2 cut(s) 145, 999
SsiI CCGC 6 cut(s) 289, 302, 424, 726, 849, 851
StyD4I CCNGG 2 cut(s) 254, 552
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 183, 189, 445
TaqI TCGA 2 cut(s) 68, 316
TasI AATT 2 cut(s) 145, 999
TatI WGTACW 1 cut(s) 1092
TauI GCSGC 2 cut(s) 426, 851
TfiI GAWTC 2 cut(s) 341, 544
Tru1I TTAA 2 cut(s) 1029, 1108
Tru9I TTAA 2 cut(s) 1029, 1108
TscAI CASTG 2 cut(s) 343, 754
TseFI GTSAC 2 cut(s) 183, 201
TseI GCWGC 2 cut(s) 269, 420
Tsp45I GTSAC 2 cut(s) 183, 201
TspDTI ATGAA 3 cut(s) 557, 878, 941
TspRI CASTG 2 cut(s) 343, 754
Van91I CCANNNNNTGG 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 525
XceI RCATGY 1 cut(s) 979
XmnI GAANNNNTTC 1 cut(s) 959
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.