Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Reverse (-)

37781654 .. 37784662

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0312500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATAAAGTTACAGTGCCATCTGAAGCTGATGTATCCAACCACACCTACAAAATTATCCATCGGGGATTTTACGTCAAAACTCAAACTCCCGTCACCCTCTCCATCTCCTAGTGCTCTTCTCCTTTGCACGAATTTCAAATCCAGCTTAACCTCAAAACCAGATTCTATCAAGTGCTTTTGTAACAAAACTGACAACACCCAACAAGTCTCTCCCTCTTCTCAGGGCTTCTCAGCACTGGCGGCAGATAGTCCATGGGACATTGCAACTGTGTGGAGCACTCTGGCTTTCTATATCTTCAGTTTGCACATTCCTCTTAGTTTTGGAGGTTTGTCTGTGGTTGCTTATGTACTGAATCAGCCTGTTCTTGATCCACAGATTGAGGCAATATCGTTGCTTGGAGCTCAGTTTCTAGAGCTCATTGCAGCAATGCTTCTTCTGCAGAGTACTGCTAAGCCACAGTATAAGTTTGCGAACTTCTTCAAAGCTAACAAATTGTCAAAAGAGAGGAGCTGGCTGTTGGTATCAGCTGTAGGATTTGGGTTTCTCTTTGTGTTGGTTTTCCTTACGTCTTTTCTTGCTGATAGATTCATTGGTCCAAAGGATATAAACAACCCTGTACTGAAGGAAATCCTGCTAAGCAGCGACATCTCAAAAGCTGCATGTTTCTTTGTATACTGCGTTATTACTCCCCTGCTGGAAGAGACTGTTTACCGAGGTTTTTTATTGACATCAATGTCATCCACCATGAAATGGCAGTCAGCTGTTTTGATAAGCTCAGCTATATTTAGTGCAGCTCACTTCTCTGGTGAGAATTTCCTACAGTTGTTTATTATTGGATGTGTCCTTGGATGCTCTTATTGTTGGACTGGAAACTTGGGTTCCTCCATTTTAATACATTCCCTTTACAACGCCCTGACCCTAATGATAACATTCTTATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

314

Amino Acids

34.45

Weight (kDa)

8.67

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rce1-like	PF02517	220 - 306	3.5e-21	Type II CAAX prenyl endopeptidase Rce1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	736
AccB7I	CCANNNNNTGG	1 cut(s)	753
AccI	GTMKAC	1 cut(s)	675
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	133, 814
AcuI	CTGAAG	3 cut(s)	44, 283, 644
AfaI	GTAC	3 cut(s)	351, 448, 621
AfiI	CCNNNNNNNGG	1 cut(s)	753
AgsI	TTSAA	2 cut(s)	139, 484
Alw21I	GWGCWC	4 cut(s)	118, 281, 406, 420
Alw26I	GTCTC	2 cut(s)	214, 698
AlwI	GGATC	1 cut(s)	365
ApeKI	GCWGC	4 cut(s)	425, 642, 659, 794
ApoI	RAATTY	2 cut(s)	133, 814
Asp700I	GAANNNNTTC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	2 cut(s)	87, 821
AvaII	GGWCC	1 cut(s)	596
BanII	GRGCYC	2 cut(s)	406, 420
Bbv12I	GWGCWC	4 cut(s)	118, 281, 406, 420
BbvI	GCAGC	4 cut(s)	437, 646, 654, 806
BccI	CCATC	3 cut(s)	27, 68, 112
BciVI	GTATCC	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	214, 698
BfaI	CTAG	2 cut(s)	111, 413
BfmI	CTRYAG	3 cut(s)	440, 531, 821
BfuI	GTATCC	1 cut(s)	45
BisI	GCNGC	5 cut(s)	243, 426, 643, 660, 795
BlpI	GCTNAGC	3 cut(s)	453, 638, 778
BlsI	GCNGC	5 cut(s)	244, 427, 644, 661, 796
BmcAI	AGTACT	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	883
BmsI	GCATC	1 cut(s)	842
Bpu1102I	GCTNAGC	3 cut(s)	453, 638, 778
BsaJI	CCNNGG	3 cut(s)	254, 715, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	753
Bse1I	ACTGG	2 cut(s)	243, 874
Bse3DI	GCAATG	3 cut(s)	261, 420, 435
BseDI	CCNNGG	3 cut(s)	254, 715, 847
BseGI	GGATG	3 cut(s)	740, 845, 857
BseLI	CCNNNNNNNGG	1 cut(s)	753
BseMI	GCAATG	3 cut(s)	261, 420, 435
BseMII	CTCAG	4 cut(s)	236, 246, 419, 792
BseNI	ACTGG	2 cut(s)	243, 874
BseRI	GAGGAG	1 cut(s)	523
BseXI	GCAGC	4 cut(s)	437, 646, 654, 806
BsgI	GTGCAG	1 cut(s)	813
BsiHKAI	GWGCWC	4 cut(s)	118, 281, 406, 420
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	753
BsmAI	GTCTC	2 cut(s)	214, 698
BsmFI	GGGAC	1 cut(s)	272
Bsp1286I	GDGCHC	4 cut(s)	118, 281, 406, 420
Bsp143I	GATC	1 cut(s)	370
Bsp1720I	GCTNAGC	3 cut(s)	453, 638, 778
Bsp19I	CCATGG	1 cut(s)	254
BspACI	CCGC	1 cut(s)	242
BspCNI	CTCAG	4 cut(s)	235, 245, 418, 791
BspLI	GGNNCC	1 cut(s)	883
BspMAI	CTGCAG	1 cut(s)	444
BspPI	GGATC	1 cut(s)	365
BspQI	GCTCTTC	1 cut(s)	123
BsrDI	GCAATG	3 cut(s)	261, 420, 435
BsrI	ACTGG	2 cut(s)	243, 874
BssECI	CCNNGG	3 cut(s)	254, 715, 847
BssMI	GATC	1 cut(s)	370
BssNAI	GTATAC	1 cut(s)	676
BssT1I	CCWWGG	2 cut(s)	254, 847
Bst1107I	GTATAC	1 cut(s)	676
Bst4CI	ACNGT	5 cut(s)	15, 271, 462, 709, 825
Bst6I	CTCTTC	3 cut(s)	123, 223, 696
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	7 cut(s)	222, 232, 317, 405, 453, 638, 778
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	740, 845, 857
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	2 cut(s)	214, 698
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 439
BstNSI	RCATGY	1 cut(s)	666
BstSFI	CTRYAG	3 cut(s)	440, 531, 821
BstV1I	GCAGC	4 cut(s)	437, 646, 654, 806
BstZ17I	GTATAC	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	740, 845, 857
BtsIMutI	CAGTG	2 cut(s)	20, 236
Cac8I	GCNNGC	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	596
Csp6I	GTAC	3 cut(s)	350, 447, 620
CviAII	CATG	3 cut(s)	255, 663, 748
CviQI	GTAC	3 cut(s)	350, 447, 620
DdeI	CTNAG	7 cut(s)	222, 232, 317, 405, 453, 638, 778
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
DrdI	GACNNNNNNGTC	1 cut(s)	736
DseDI	GACNNNNNNGTC	1 cut(s)	736
Eam1104I	CTCTTC	3 cut(s)	123, 223, 696
EarI	CTCTTC	3 cut(s)	123, 223, 696
Ecl136II	GAGCTC	2 cut(s)	404, 418
Eco130I	CCWWGG	2 cut(s)	254, 847
Eco24I	GRGCYC	2 cut(s)	406, 420
Eco47I	GGWCC	1 cut(s)	596
Eco53kI	GAGCTC	2 cut(s)	404, 418
Eco57I	CTGAAG	3 cut(s)	44, 283, 644
EcoICRI	GAGCTC	2 cut(s)	404, 418
EcoT14I	CCWWGG	2 cut(s)	254, 847
EcoT38I	GRGCYC	2 cut(s)	406, 420
ErhI	CCWWGG	2 cut(s)	254, 847
FaeI	CATG	3 cut(s)	258, 666, 751
FaiI	YATR	9 cut(s)	256, 294, 348, 465, 608, 664, 676, 749, 785
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	254, 662, 747
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	5 cut(s)	243, 426, 643, 660, 795
FokI	GGATG	3 cut(s)	727, 852, 864
FriOI	GRGCYC	2 cut(s)	406, 420
Fsp4HI	GCNGC	5 cut(s)	243, 426, 643, 660, 795
FspBI	CTAG	2 cut(s)	111, 413
GluI	GCNGC	5 cut(s)	243, 426, 643, 660, 795
Hin1II	CATG	3 cut(s)	258, 666, 751
HinfI	GANTC	3 cut(s)	164, 355, 588
HphI	GGTGA	2 cut(s)	87, 821
Hpy166II	GTNNAC	2 cut(s)	676, 712
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	368, 413
Hpy8I	GTNNAC	2 cut(s)	676, 712
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	5 cut(s)	15, 271, 462, 709, 825
HpyCH4IV	ACGT	2 cut(s)	74, 569
HpyCH4V	TGCA	7 cut(s)	129, 266, 307, 425, 442, 662, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 439
HpyF3I	CTNAG	7 cut(s)	222, 232, 317, 405, 453, 638, 778
HpySE526I	ACGT	2 cut(s)	74, 569
Hsp92II	CATG	3 cut(s)	258, 666, 751
Kzo9I	GATC	1 cut(s)	370
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	3 cut(s)	276, 401, 510
Lsp1109I	GCAGC	4 cut(s)	437, 646, 654, 806
LweI	GCATC	1 cut(s)	842
MaeI	CTAG	2 cut(s)	111, 413
MaeII	ACGT	2 cut(s)	74, 569
MaeIII	GTNAC	3 cut(s)	9, 93, 182
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	6 cut(s)	110, 210, 289, 428, 472, 713
MhlI	GDGCHC	4 cut(s)	118, 281, 406, 420
MluCI	AATT	4 cut(s)	53, 133, 494, 814
MmeI	TCCRAC	2 cut(s)	62, 845
MnlI	CCTC	9 cut(s)	109, 163, 226, 320, 324, 376, 501, 710, 895
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	2 cut(s)	149, 893
MspA1I	CMGCKG	2 cut(s)	530, 764
MwoI	GCNNNNNNNGC	2 cut(s)	242, 439
NcoI	CCATGG	1 cut(s)	254
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	3 cut(s)	258, 666, 751
NlaIV	GGNNCC	1 cut(s)	883
NmuCI	GTSAC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	666
PciSI	GCTCTTC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	164, 355, 588
PflMI	CCANNNNNTGG	1 cut(s)	753
PkrI	GCNGC	5 cut(s)	244, 427, 644, 661, 796
Psp124BI	GAGCTC	2 cut(s)	406, 420
PspN4I	GGNNCC	1 cut(s)	883
PspPI	GGNCC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	444
PvuII	CAGCTG	2 cut(s)	530, 764
RsaI	GTAC	3 cut(s)	351, 448, 621
RsaNI	GTAC	3 cut(s)	350, 447, 620
SacI	GAGCTC	2 cut(s)	406, 420
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	149, 893
SatI	GCNGC	5 cut(s)	243, 426, 643, 660, 795
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	596
ScaI	AGTACT	1 cut(s)	448
SduI	GDGCHC	4 cut(s)	118, 281, 406, 420
SfaNI	GCATC	1 cut(s)	842
SfcI	CTRYAG	3 cut(s)	440, 531, 821
SinI	GGWCC	1 cut(s)	596
Sse9I	AATT	4 cut(s)	53, 133, 494, 814
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	111, 413
SstI	GAGCTC	2 cut(s)	406, 420
StyI	CCWWGG	2 cut(s)	254, 847
TaaI	ACNGT	5 cut(s)	15, 271, 462, 709, 825
TaiI	ACGT	2 cut(s)	77, 572
TasI	AATT	4 cut(s)	53, 133, 494, 814
TatI	WGTACW	3 cut(s)	349, 446, 619
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	164, 355, 588
Tru1I	TTAA	2 cut(s)	149, 893
Tru9I	TTAA	2 cut(s)	149, 893
TscAI	CASTG	2 cut(s)	20, 243
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	4 cut(s)	425, 642, 659, 794
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	2 cut(s)	580, 764
TspRI	CASTG	2 cut(s)	20, 243
Van91I	CCANNNNNTGG	1 cut(s)	753
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	2 cut(s)	133, 814
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	1 cut(s)	666
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	2 cut(s)	111, 413
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.