RchiOBHm_Chr2g0145231

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001441
Physical Location & Seq
Forward (+)
62856127 .. 62861126
5000 bp
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UTR
Exon/CDS
Intron
PRQ51509

Sequence Viewer

Length: 378 bp
ATGATAAAGCCCCCGAAGGAAGGCTTGGTTGAGAAGTGTCTTATTTCCATCCAGATAAAATGCATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAAATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAACATATGTCTTCAGTTTTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGAAAGAAGCTATTAAAGTATCTTCGAAGAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCAAACTTGGTCTCTGGGACACACCAGATGTCAAACAAGAGTACAAGAAACATTACAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

125

Amino Acids

14.55

Weight (kDa)

9.83

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 35 - 109 4.1e-23 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 20
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 2 cut(s) 155, 236
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 3 cut(s) 82, 94, 262
AluI AGCT 3 cut(s) 82, 94, 262
Alw26I GTCTC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 277
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 3 cut(s) 60, 183, 224
BccI CCATC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 3 cut(s) 60, 183, 224
Bpu14I TTCGAA 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 246
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 265
BsgI GTGCAG 2 cut(s) 129, 266
BslFI GGGAC 2 cut(s) 305, 344
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 2 cut(s) 305, 344
BsmI GAATGC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 329
Bsp119I TTCGAA 1 cut(s) 277
Bsp143I GATC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 277
BspTI CTTAAG 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 1 cut(s) 293
BssMI GATC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 72
BstV2I GAAGAC 3 cut(s) 60, 183, 224
BtsCI GGATG 1 cut(s) 48
Csp6I GTAC 1 cut(s) 355
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 10, 24, 82, 94, 262
CviKI_1 RGCY 5 cut(s) 10, 24, 82, 94, 262
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
DraI TTTAAA 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 65
FaeI CATG 1 cut(s) 67
FaiI YATR 3 cut(s) 65, 186, 188
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 2 cut(s) 305, 344
FatI CATG 1 cut(s) 63
FauNDI CATATG 1 cut(s) 186
FokI GGATG 1 cut(s) 35
Hin1II CATG 1 cut(s) 67
HinfI GANTC 2 cut(s) 128, 293
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 10, 14
HpyCH4V TGCA 4 cut(s) 63, 74, 146, 247
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 4 cut(s) 65, 274, 313, 351
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 5 cut(s) 60, 183, 224, 266, 291
MluCI AATT 4 cut(s) 87, 113, 133, 373
MlyI GAGTC 2 cut(s) 137, 287
MnlI CCTC 1 cut(s) 243
Mph1103I ATGCAT 1 cut(s) 65
MseI TTAA 4 cut(s) 117, 225, 266, 376
MspCI CTTAAG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 217
NdeI CATATG 1 cut(s) 186
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 1 cut(s) 67
NspV TTCGAA 1 cut(s) 277
PctI GAATGC 1 cut(s) 217
PleI GAGTC 2 cut(s) 136, 287
PpsI GAGTC 2 cut(s) 136, 287
PstI CTGCAG 1 cut(s) 76
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 4 cut(s) 117, 225, 266, 376
Sau3AI GATC 1 cut(s) 177
SchI GAGTC 2 cut(s) 137, 287
SetI ASST 3 cut(s) 84, 96, 264
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 87, 113, 133, 373
TaqI TCGA 1 cut(s) 277
TasI AATT 4 cut(s) 87, 113, 133, 373
TatI WGTACW 1 cut(s) 354
Tru1I TTAA 4 cut(s) 117, 225, 266, 376
Tru9I TTAA 4 cut(s) 117, 225, 266, 376
TspDTI ATGAA 1 cut(s) 126
Vha464I CTTAAG 1 cut(s) 224
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 67
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.