Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Forward (+)

12476492 .. 12477919

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG075500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGTTTGTTGAGGTTTCCGAAAAGTTTGGATATGAATCCCACCCAGGATGCGGGTGTTAGCAAGGGAGCACTTCCGAGTTTGTTTTATAAGGACAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGCAAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTGTATGAGGACTTCAGGCACAGCTTGGAGATCATCAAGATATCTCAAGAAGAGGAGAAGCATAGGAAAACTTCGAGGCAGAGGCTTCGTATCATAGATATAGGTCAAACTCCTGAGTATATGATGAAGCCCCCGAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGATAACATGCATGTCTTCTGCAGAAAAGCTGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

166

Amino Acids

19.35

Weight (kDa)

7.79

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AciI	CCGC	2 cut(s)	53, 108
AcuI	CTGAAG	1 cut(s)	292
AfiI	CCNNNNNNNGG	4 cut(s)	52, 203, 204, 434
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	5 cut(s)	120, 159, 181, 318, 491
AluI	AGCT	5 cut(s)	120, 159, 181, 318, 491
Alw21I	GWGCWC	2 cut(s)	73, 122
Alw26I	GTCTC	2 cut(s)	105, 285
Ama87I	CYCGRG	2 cut(s)	197, 282
AoxI	GGCC	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	195
AvaI	CYCGRG	2 cut(s)	197, 282
BanII	GRGCYC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
BbsI	GAAGAC	2 cut(s)	140, 469
Bbv12I	GWGCWC	2 cut(s)	73, 122
BccI	CCATC	2 cut(s)	253, 465
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	105, 285
BfmI	CTRYAG	1 cut(s)	481
BlpI	GCTNAGC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	47
BmeT110I	CYCGRG	2 cut(s)	197, 282
BmgT120I	GGNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	40, 115
BpiI	GAAGAC	2 cut(s)	140, 469
Bpu1102I	GCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	45, 198
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 203, 204, 434
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	45, 198
BseGI	GGATG	4 cut(s)	55, 130, 261, 457
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	4 cut(s)	52, 203, 204, 434
BseMII	CTCAG	3 cut(s)	173, 267, 399
BseRI	GAGGAG	2 cut(s)	215, 362
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	73, 122
BsiHKCI	CYCGRG	2 cut(s)	197, 282
BslI	CCNNNNNNNGG	4 cut(s)	52, 203, 204, 434
BsmAI	GTCTC	2 cut(s)	105, 285
BsnI	GGCC	1 cut(s)	196
BsoBI	CYCGRG	2 cut(s)	197, 282
Bsp1286I	GDGCHC	2 cut(s)	73, 122
Bsp143I	GATC	1 cut(s)	324
Bsp1720I	GCTNAGC	1 cut(s)	182
BspACI	CCGC	2 cut(s)	53, 108
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	3 cut(s)	174, 268, 400
BspMAI	CTGCAG	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	45, 198
BssMI	GATC	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	47
Bst6I	CTCTTC	2 cut(s)	258, 339
BstDEI	CTNAG	3 cut(s)	182, 276, 408
BstF5I	GGATG	4 cut(s)	55, 130, 261, 457
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	2 cut(s)	105, 285
BstMBI	GATC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	472, 476
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	481
BstV2I	GAAGAC	2 cut(s)	140, 469
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	55, 130, 261, 457
Cfr13I	GGNCC	1 cut(s)	195
CviAII	CATG	2 cut(s)	469, 473
CviJI	RGCY	9 cut(s)	120, 159, 181, 196, 318, 379, 424, 438, 491
CviKI_1	RGCY	9 cut(s)	120, 159, 181, 196, 318, 379, 424, 438, 491
DdeI	CTNAG	3 cut(s)	182, 276, 408
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	258, 339
EarI	CTCTTC	2 cut(s)	258, 339
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	292
Eco88I	CYCGRG	2 cut(s)	197, 282
EcoICRI	GAGCTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	336
EcoT22I	ATGCAT	2 cut(s)	130, 474
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	2 cut(s)	472, 476
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FatI	CATG	2 cut(s)	468, 472
FauI	CCCGC	1 cut(s)	46
FokI	GGATG	4 cut(s)	62, 137, 268, 444
FriOI	GRGCYC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	472, 476
HinfI	GANTC	3 cut(s)	37, 272, 278
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	4 cut(s)	21, 78, 124, 277
Hpy188III	TCNNGA	4 cut(s)	331, 341, 407, 461
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	3 cut(s)	202, 424, 428
HpyCH4V	TGCA	3 cut(s)	128, 472, 483
HpyF3I	CTNAG	3 cut(s)	182, 276, 408
Hsp92II	CATG	2 cut(s)	472, 476
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	32, 59, 295, 420, 474
LweI	GCATC	2 cut(s)	40, 115
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	5 cut(s)	145, 160, 275, 356, 469
MhlI	GDGCHC	2 cut(s)	73, 122
MluCI	AATT	1 cut(s)	496
MlyI	GAGTC	2 cut(s)	281, 287
Mph1103I	ATGCAT	2 cut(s)	130, 474
MroXI	GAANNNNTTC	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	2 cut(s)	472, 476
NsiI	ATGCAT	2 cut(s)	130, 474
NspI	RCATGY	2 cut(s)	472, 476
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	37
PleI	GAGTC	2 cut(s)	280, 286
PpsI	GAGTC	2 cut(s)	280, 286
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	2 cut(s)	281, 287
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	73, 122
SetI	ASST	8 cut(s)	17, 122, 161, 183, 242, 320, 400, 493
SfaNI	GCATC	2 cut(s)	40, 115
SfcI	CTRYAG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	2 cut(s)	53, 108
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	45
TaqI	TCGA	1 cut(s)	368
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	50, 434
XceI	RCATGY	2 cut(s)	472, 476
XmnI	GAANNNNTTC	1 cut(s)	452
Zsp2I	ATGCAT	2 cut(s)	130, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.