Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Reverse (-)

33621085 .. 33626340

Gene Structure 5256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG152500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGATGGCTCTCCGACTGAGAACCACCCACCACCGAACCCTCACAAACCCATCATCTCTCATTCACCTCTTCTCCACTTCCTCCTCAGACCCATCCGACTCAACAGACCCAACTGAACCCAATCCCCAGTCCGACCCTTCCTCTCTCTCCAACTACTTCAGCGATGTCAAAGCCAGCCTCAGGCAACAGCAACAACACAGGAGCAGACCCACTTCTCAGAACAACAACCCTTCTCTCTCCCGCCCTTCCAAGGCCGCCTCCTTGGAGGAAATCAGCAACAAGCTTGCGGAGTTTCGGCTTCGAAACCCCACTGCACCTCCACCTCCACCTCCGAACCCCATTTCGTTTGAGAAGCTCTATAACAAAGACGTGAGCAGCCGCAAGATGGAGTTTCAGGCGATTCGGGAGAGTCTGAAGCTTATAAAGCCCAATGCCGATGAGCGGAATGAGAGGAAGGGTGAGGGTTTGCCGTTGTTGAGGCTTCGGAAAAGTTTGGATATGAATCCCAGCCAGGATGCGGGTGTTAGGGAGGGAGCACTTCCGAATTTGTTTTATAAGGAGAAGGAGAGAAACGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGCGAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAAAGAGTCTGAGTCTCTGGTTGGGGGAGTGTTTGTGGACTTGAGGCACACCTTGGAGGCCTTGAAGATATCCCAACAAGAGGAGAAGCATAGGAAAACTTCGAGGCAGAGGCTTCGTATCATAGATATAGGTCAAACTCCTGAGTATATGATGAAACCCCCGAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGATAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGGTATGGGTTTTGATATTGTATTTTACTACATCTTTTTTTTAGTCATAGAAGAAAGCATTTTTTGTATTCTCATTCTTACTATACAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

372

Amino Acids

42.55

Weight (kDa)

8.29

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	422, 555
AccBSI	CCGCTC	1 cut(s)	442
AciI	CCGC	6 cut(s)	241, 255, 287, 379, 442, 518
AcsI	RAATTY	2 cut(s)	544, 983
AcuI	CTGAAG	2 cut(s)	142, 434
AfiI	CCNNNNNNNGG	9 cut(s)	180, 250, 385, 441, 517, 668, 669, 811, 899
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	3 cut(s)	598, 796, 1025
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	2 cut(s)	887, 919
AluBI	AGCT	8 cut(s)	283, 355, 418, 585, 624, 646, 952, 964
AluI	AGCT	8 cut(s)	283, 355, 418, 585, 624, 646, 952, 964
Alw21I	GWGCWC	2 cut(s)	538, 587
Alw26I	GTCTC	2 cut(s)	570, 750
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	3 cut(s)	252, 659, 789
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	2 cut(s)	544, 983
Asp700I	GAANNNNTTC	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	2 cut(s)	56, 470
AsuII	TTCGAA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	662
AxyI	CCTNAGG	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	587
BauI	CACGAG	1 cut(s)	1017
BbsI	GAAGAC	2 cut(s)	605, 930
Bbv12I	GWGCWC	2 cut(s)	538, 587
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	5 cut(s)	58, 100, 379, 718, 930
BceAI	ACGGC	1 cut(s)	454
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	570, 750
BfmI	CTRYAG	1 cut(s)	942
BisI	GCNGC	3 cut(s)	255, 376, 379
BlpI	GCTNAGC	1 cut(s)	647
BlsI	GCNGC	3 cut(s)	256, 377, 380
Bme1390I	CCNGG	1 cut(s)	512
BmeT110I	CYCGRG	1 cut(s)	662
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	660
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	505, 580
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	2 cut(s)	605, 930
Bpu1102I	GCTNAGC	1 cut(s)	647
Bpu14I	TTCGAA	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	793
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	249, 261, 663, 783
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 301, 331, 750, 780
Bsc4I	CCNNNNNNNGG	9 cut(s)	180, 250, 385, 441, 517, 668, 669, 811, 899
Bse1I	ACTGG	1 cut(s)	127
Bse21I	CCTNAGG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	4 cut(s)	249, 261, 663, 783
BseGI	GGATG	5 cut(s)	92, 520, 595, 726, 922
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	9 cut(s)	180, 250, 385, 441, 517, 668, 669, 811, 899
BseMII	CTCAG	7 cut(s)	8, 99, 193, 230, 638, 732, 864
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	3 cut(s)	73, 680, 827
BseXI	GCAGC	1 cut(s)	387
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	2 cut(s)	297, 999
BshFI	GGCC	3 cut(s)	254, 661, 791
BsiHKAI	GWGCWC	2 cut(s)	538, 587
BsiHKCI	CYCGRG	1 cut(s)	662
BslI	CCNNNNNNNGG	9 cut(s)	180, 250, 385, 441, 517, 668, 669, 811, 899
BsmAI	GTCTC	2 cut(s)	570, 750
BsnI	GGCC	3 cut(s)	254, 661, 791
BsoBI	CYCGRG	1 cut(s)	662
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	538, 587
Bsp1720I	GCTNAGC	1 cut(s)	647
BspACI	CCGC	6 cut(s)	241, 255, 287, 379, 442, 518
BspANI	GGCC	3 cut(s)	254, 661, 791
BspCNI	CTCAG	7 cut(s)	9, 98, 192, 229, 639, 733, 865
BspMAI	CTGCAG	1 cut(s)	946
BspT104I	TTCGAA	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	4 cut(s)	249, 261, 663, 783
BssSI	CACGAG	1 cut(s)	1017
BssT1I	CCWWGG	3 cut(s)	249, 261, 783
Bst2BI	CACGAG	1 cut(s)	1017
Bst2UI	CCWGG	1 cut(s)	512
Bst6I	CTCTTC	2 cut(s)	74, 723
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	175, 285
BstDEI	CTNAG	7 cut(s)	17, 85, 179, 216, 647, 741, 873
BstF5I	GGATG	5 cut(s)	92, 520, 595, 726, 922
BstMAI	GTCTC	2 cut(s)	570, 750
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	937
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	942
BstV1I	GCAGC	1 cut(s)	387
BstV2I	GAAGAC	2 cut(s)	605, 930
Bsu36I	CCTNAGG	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	254, 661, 791
BtgZI	GCGATG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	5 cut(s)	92, 520, 595, 726, 922
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	175, 285
Cfr13I	GGNCC	1 cut(s)	660
CviAII	CATG	1 cut(s)	934
DdeI	CTNAG	7 cut(s)	17, 85, 179, 216, 647, 741, 873
DraI	TTTAAA	1 cut(s)	988
Eam1104I	CTCTTC	2 cut(s)	74, 723
EarI	CTCTTC	2 cut(s)	74, 723
Ecl136II	GAGCTC	1 cut(s)	585
Eco130I	CCWWGG	3 cut(s)	249, 261, 783
Eco147I	AGGCCT	1 cut(s)	791
Eco24I	GRGCYC	1 cut(s)	587
Eco32I	GATATC	1 cut(s)	801
Eco53kI	GAGCTC	1 cut(s)	585
Eco57I	CTGAAG	2 cut(s)	142, 434
Eco81I	CCTNAGG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	801
EcoT14I	CCWWGG	3 cut(s)	249, 261, 783
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	587
ErhI	CCWWGG	3 cut(s)	249, 261, 783
FaeI	CATG	1 cut(s)	937
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FatI	CATG	1 cut(s)	933
FauI	CCCGC	2 cut(s)	248, 511
Fnu4HI	GCNGC	3 cut(s)	255, 376, 379
FokI	GGATG	5 cut(s)	79, 527, 602, 733, 909
FriOI	GRGCYC	1 cut(s)	587
Fsp4HI	GCNGC	3 cut(s)	255, 376, 379
GluI	GCNGC	3 cut(s)	255, 376, 379
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	254, 661, 791
Hin1II	CATG	1 cut(s)	937
HindIII	AAGCTT	2 cut(s)	281, 416
HinfI	GANTC	7 cut(s)	98, 400, 409, 502, 737, 743, 998
HphI	GGTGA	2 cut(s)	56, 470
Hpy166II	GTNNAC	2 cut(s)	681, 769
Hpy188III	TCNNGA	3 cut(s)	404, 872, 926
Hpy8I	GTNNAC	2 cut(s)	681, 769
HpyAV	CCTTC	8 cut(s)	147, 240, 255, 448, 556, 667, 889, 893
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	314, 593, 944, 1016
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	7 cut(s)	17, 85, 179, 216, 647, 741, 873
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	1 cut(s)	937
LmnI	GCTCC	2 cut(s)	201, 533
Lsp1109I	GCAGC	1 cut(s)	387
LweI	GCATC	2 cut(s)	505, 580
MaeII	ACGT	1 cut(s)	369
MbiI	CCGCTC	1 cut(s)	442
MboII	GAAGA	7 cut(s)	61, 610, 625, 740, 808, 930, 1088
MhlI	GDGCHC	2 cut(s)	538, 587
MluCI	AATT	3 cut(s)	544, 957, 983
MlyI	GAGTC	5 cut(s)	92, 418, 746, 752, 1007
MmeI	TCCRAC	4 cut(s)	37, 120, 156, 174
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	917
MseI	TTAA	1 cut(s)	987
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	424
NlaIII	CATG	1 cut(s)	937
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	937
NspV	TTCGAA	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	791
PciI	ACATGT	1 cut(s)	933
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	2 cut(s)	400, 502
PkrI	GCNGC	3 cut(s)	256, 377, 380
PleI	GAGTC	5 cut(s)	92, 417, 745, 751, 1006
PpsI	GAGTC	5 cut(s)	92, 417, 745, 751, 1006
PscI	ACATGT	1 cut(s)	933
PsiI	TTATAA	2 cut(s)	422, 555
Psp124BI	GAGCTC	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	660
PstI	CTGCAG	1 cut(s)	946
SacI	GAGCTC	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	987
SatI	GCNGC	3 cut(s)	255, 376, 379
Sau96I	GGNCC	1 cut(s)	660
SchI	GAGTC	5 cut(s)	92, 418, 746, 752, 1007
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	538, 587
SfaNI	GCATC	2 cut(s)	505, 580
SfcI	CTRYAG	1 cut(s)	942
SfuI	TTCGAA	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
Sse9I	AATT	3 cut(s)	544, 957, 983
SseBI	AGGCCT	1 cut(s)	791
SsiI	CCGC	6 cut(s)	241, 255, 287, 379, 442, 518
SstI	GAGCTC	1 cut(s)	587
StuI	AGGCCT	1 cut(s)	791
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	3 cut(s)	249, 261, 783
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	301, 833
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	3 cut(s)	544, 957, 983
TauI	GCSGC	2 cut(s)	257, 381
TfiI	GAWTC	2 cut(s)	400, 502
Tru1I	TTAA	1 cut(s)	987
Tru9I	TTAA	1 cut(s)	987
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	1 cut(s)	375
TspDTI	ATGAA	3 cut(s)	515, 899, 996
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	2 cut(s)	544, 983
XceI	RCATGY	1 cut(s)	937
XmnI	GAANNNNTTC	1 cut(s)	917
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.