Rh5CG250900

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001441
Physical Location & Seq
Forward (+)
26399739 .. 26401752
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG250900.1

Sequence Viewer

Length: 666 bp
ATGAATCCCACCCAGGATGCAGGTGTTAGCAAGGGAGCACTTCCGAGTTTGTTTTATAAGGACAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGCAAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTGTATGAGGACTTCAGGCACAGCTTGGAGATCATCAAGATATCTCAAGAAGAGGAGAAGCATAGGAAAACTTCGAGGCAGAGGCTTCGTATCATAGATATAGGTCAAACTCCTGAGTATATGATGAAGCCCCCGAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGATAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGGGCACACCAGTCCTTTTCGTGGAGGGCTGTTTGGTGTGCTAAAGTACTGCTTAAGGTGGCTTTCTTTGCTTGGTCTTTGGCATGAGGTAGAACCTCACTTTCCAAAATTTGAGGAAGAGTGGCATCATCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

221

Amino Acids

25.7

Weight (kDa)

6.48

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AarI CACCTGC 1 cut(s) 11
Acc36I ACCTGC 1 cut(s) 11
AciI CCGC 1 cut(s) 75
AcsI RAATTY 2 cut(s) 485, 635
AcuI CTGAAG 1 cut(s) 259
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 4 cut(s) 170, 171, 401, 548
AflII CTTAAG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 2 cut(s) 100, 527
AjnI CCWGG 1 cut(s) 12
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 6 cut(s) 87, 126, 148, 285, 454, 466
AluI AGCT 6 cut(s) 87, 126, 148, 285, 454, 466
Alw21I GWGCWC 2 cut(s) 40, 89
Alw26I GTCTC 2 cut(s) 72, 252
Ama87I CYCGRG 2 cut(s) 164, 249
AoxI GGCC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 485, 635
Asp700I GAANNNNTTC 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 162
AvaI CYCGRG 2 cut(s) 164, 249
BaeGI GKGCMC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 257, 289
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 2 cut(s) 107, 432
Bbv12I GWGCWC 2 cut(s) 40, 89
BccI CCATC 2 cut(s) 220, 432
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 2 cut(s) 72, 252
BfmI CTRYAG 1 cut(s) 444
BfrI CTTAAG 1 cut(s) 580
BfuAI ACCTGC 1 cut(s) 11
BlpI GCTNAGC 1 cut(s) 149
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 1 cut(s) 14
BmeT110I CYCGRG 2 cut(s) 164, 249
BmgT120I GGNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 3 cut(s) 7, 82, 661
BpiI GAAGAC 2 cut(s) 107, 432
Bpu1102I GCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 12, 165
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 171, 401, 548
Bse1I ACTGG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 12, 165
BseGI GGATG 4 cut(s) 22, 97, 228, 424
BseLI CCNNNNNNNGG 4 cut(s) 170, 171, 401, 548
BseMII CTCAG 3 cut(s) 140, 234, 366
BseNI ACTGG 1 cut(s) 537
BseRI GAGGAG 2 cut(s) 182, 329
BseSI GKGCMC 1 cut(s) 534
BsgI GTGCAG 1 cut(s) 501
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 40, 89
BsiHKCI CYCGRG 2 cut(s) 164, 249
BslI CCNNNNNNNGG 4 cut(s) 170, 171, 401, 548
BsmAI GTCTC 2 cut(s) 72, 252
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 2 cut(s) 164, 249
Bsp1286I GDGCHC 3 cut(s) 40, 89, 534
Bsp143I GATC 1 cut(s) 291
Bsp1720I GCTNAGC 1 cut(s) 149
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 3 cut(s) 141, 235, 367
BspMAI CTGCAG 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 11
BspTI CTTAAG 1 cut(s) 580
BsrI ACTGG 1 cut(s) 537
BssECI CCNNGG 2 cut(s) 12, 165
BssMI GATC 1 cut(s) 291
BssSI CACGAG 1 cut(s) 519
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 14
Bst6I CTCTTC 3 cut(s) 225, 306, 639
BstAFI CTTAAG 1 cut(s) 580
BstDEI CTNAG 3 cut(s) 149, 243, 375
BstF5I GGATG 4 cut(s) 22, 97, 228, 424
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 2 cut(s) 72, 252
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 595
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 534
BstV2I GAAGAC 2 cut(s) 107, 432
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 4 cut(s) 22, 97, 228, 424
BveI ACCTGC 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 574
CviAII CATG 2 cut(s) 436, 611
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 3 cut(s) 149, 243, 375
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
DraI TTTAAA 1 cut(s) 490
Eam1104I CTCTTC 3 cut(s) 225, 306, 639
EarI CTCTTC 3 cut(s) 225, 306, 639
Ecl136II GAGCTC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 89
Eco32I GATATC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 259
Eco88I CYCGRG 2 cut(s) 164, 249
EcoICRI GAGCTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 12
EcoRV GATATC 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 89
FaeI CATG 2 cut(s) 439, 614
FalI AAGNNNNNCTT 4 cut(s) 389, 421, 563, 595
FatI CATG 2 cut(s) 435, 610
FokI GGATG 4 cut(s) 29, 104, 235, 411
FriOI GRGCYC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 163
Hin1II CATG 2 cut(s) 439, 614
HinfI GANTC 4 cut(s) 4, 239, 245, 500
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 5 cut(s) 45, 91, 244, 499, 505
Hpy188III TCNNGA 4 cut(s) 298, 308, 374, 428
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 3 cut(s) 169, 391, 395
HpyCH4V TGCA 4 cut(s) 20, 95, 446, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 595
HpyF3I CTNAG 3 cut(s) 149, 243, 375
Hsp92II CATG 2 cut(s) 439, 614
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 6 cut(s) 6, 26, 262, 387, 441, 550
LweI GCATC 3 cut(s) 7, 82, 661
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 6 cut(s) 112, 127, 242, 323, 432, 656
MhlI GDGCHC 3 cut(s) 40, 89, 534
MluCI AATT 4 cut(s) 459, 485, 635, 661
MlyI GAGTC 3 cut(s) 248, 254, 509
Mph1103I ATGCAT 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 3 cut(s) 489, 581, 660
MspCI CTTAAG 1 cut(s) 580
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 595
NdeII GATC 1 cut(s) 291
NlaIII CATG 2 cut(s) 439, 614
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 439
PaqCI CACCTGC 1 cut(s) 11
PciI ACATGT 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 3 cut(s) 247, 253, 508
PpsI GAGTC 3 cut(s) 247, 253, 508
PscI ACATGT 1 cut(s) 435
PsiI TTATAA 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 1 cut(s) 162
PstI CTGCAG 1 cut(s) 448
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 3 cut(s) 489, 581, 660
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 1 cut(s) 162
ScaI AGTACT 1 cut(s) 575
SchI GAGTC 3 cut(s) 248, 254, 509
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 3 cut(s) 40, 89, 534
SfaNI GCATC 3 cut(s) 7, 82, 661
SfcI CTRYAG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 306, 580
SmoI CTYRAG 2 cut(s) 306, 580
Sse9I AATT 4 cut(s) 459, 485, 635, 661
SsiI CCGC 1 cut(s) 75
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 12
TaqI TCGA 1 cut(s) 335
TaqII GACCGA 1 cut(s) 119
TasI AATT 4 cut(s) 459, 485, 635, 661
TatI WGTACW 1 cut(s) 573
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 489, 581, 660
Tru9I TTAA 3 cut(s) 489, 581, 660
TspDTI ATGAA 3 cut(s) 17, 401, 498
Vha464I CTTAAG 1 cut(s) 580
XapI RAATTY 2 cut(s) 485, 635
XceI RCATGY 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 419
ZrmI AGTACT 1 cut(s) 575
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.