Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Reverse (-)

30994321 .. 31006365

Gene Structure 12045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCCTTTGTAAATGATGCTGAATCTATCAGGCATTTAAAGGATTACCTCAAGCAAGAAAGTAGCCAGTTGCAGTTTACACTGGCTTTCATTAACGAGATGGTTTGTAGTGCGTGCTCTGTTCCTCTGCATAATGTGATTTTAGGATGCGGGTGTTACCGTGTTAGCAAGGGAGCACTTCCGAGTTTGTTTTATAAGGACAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGCAAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTGTATGAGGACTTCAGGCACAGCTTGGAGATCATCAAGATATCTCAAGAAGAGGAGAAGCATAGGAAAACTTCGAGGCAGGTGGTGAAAATTGAAATCGATTCGTGGGTGGTTGTGTATTATGTATTTTTGTTTTCTTTCATTATGATTTTTCTGGGGTTCTTAAGAAGTGTCGATTCTGGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

195

Amino Acids

22.52

Weight (kDa)

6.14

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	469
AccB1I	GGYRCC	1 cut(s)	581
AciI	CCGC	2 cut(s)	150, 213
AcuI	CTGAAG	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	308, 309
AflII	CTTAAG	1 cut(s)	562
AgsI	TTSAA	2 cut(s)	238, 494
AluBI	AGCT	4 cut(s)	225, 264, 286, 423
AluI	AGCT	4 cut(s)	225, 264, 286, 423
Alw21I	GWGCWC	3 cut(s)	119, 178, 227
Alw26I	GTCTC	2 cut(s)	210, 390
Ama87I	CYCGRG	2 cut(s)	302, 387
AoxI	GGCC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	496
AvaI	CYCGRG	2 cut(s)	302, 387
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	3 cut(s)	119, 178, 227
BccI	CCATC	2 cut(s)	94, 358
BcoDI	GTCTC	2 cut(s)	210, 390
BfrI	CTTAAG	1 cut(s)	562
BfuAI	ACCTGC	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	287
BmeT110I	CYCGRG	2 cut(s)	302, 387
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	583
BmsI	GCATC	3 cut(s)	7, 137, 220
BpiI	GAAGAC	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	2 cut(s)	35, 429
Bsa29I	ATCGAT	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 309
Bse1I	ACTGG	2 cut(s)	67, 87
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	3 cut(s)	152, 235, 366
BseLI	CCNNNNNNNGG	2 cut(s)	308, 309
BseMII	CTCAG	2 cut(s)	278, 372
BseNI	ACTGG	2 cut(s)	67, 87
BseRI	GAGGAG	2 cut(s)	320, 467
BshFI	GGCC	1 cut(s)	301
BshNI	GGYRCC	1 cut(s)	581
BshVI	ATCGAT	1 cut(s)	498
BsiHKAI	GWGCWC	3 cut(s)	119, 178, 227
BsiHKCI	CYCGRG	2 cut(s)	302, 387
BslI	CCNNNNNNNGG	2 cut(s)	308, 309
BsmAI	GTCTC	2 cut(s)	210, 390
BsnI	GGCC	1 cut(s)	301
BsoBI	CYCGRG	2 cut(s)	302, 387
Bsp1286I	GDGCHC	3 cut(s)	119, 178, 227
Bsp143I	GATC	1 cut(s)	429
Bsp1720I	GCTNAGC	1 cut(s)	287
BspACI	CCGC	2 cut(s)	150, 213
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	2 cut(s)	279, 373
BspDI	ATCGAT	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	583
BspMI	ACCTGC	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	581
BspTI	CTTAAG	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	67, 87
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	2 cut(s)	363, 444
BstAFI	CTTAAG	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	287, 381
BstF5I	GGATG	3 cut(s)	152, 235, 366
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	2 cut(s)	210, 390
BstMBI	GATC	1 cut(s)	429
BstV2I	GAAGAC	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	301
BsuTUI	ATCGAT	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	152, 235, 366
BtsIMutI	CAGTG	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	300
ClaI	ATCGAT	1 cut(s)	498
CviJI	RGCY	7 cut(s)	66, 86, 225, 264, 286, 301, 423
CviKI_1	RGCY	7 cut(s)	66, 86, 225, 264, 286, 301, 423
DdeI	CTNAG	2 cut(s)	287, 381
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	363, 444
EarI	CTCTTC	2 cut(s)	363, 444
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	397
Eco88I	CYCGRG	2 cut(s)	302, 387
EcoICRI	GAGCTC	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	227
FaiI	YATR	8 cut(s)	132, 195, 261, 267, 405, 462, 522, 545
FauI	CCCGC	1 cut(s)	143
FokI	GGATG	3 cut(s)	159, 242, 373
FriOI	GRGCYC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	301
HinfI	GANTC	5 cut(s)	23, 377, 383, 500, 575
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	2 cut(s)	78, 321
Hpy188I	TCNGA	3 cut(s)	183, 229, 382
Hpy188III	TCNNGA	2 cut(s)	436, 446
Hpy8I	GTNNAC	2 cut(s)	78, 321
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	73, 130, 233
HpyF3I	CTNAG	2 cut(s)	287, 381
Kzo9I	GATC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	7 cut(s)	16, 68, 80, 400, 464, 539, 564
LweI	GCATC	3 cut(s)	7, 137, 220
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	4 cut(s)	250, 265, 380, 461
MhlI	GDGCHC	3 cut(s)	119, 178, 227
MluCI	AATT	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	386, 392
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	3 cut(s)	38, 93, 563
MspCI	CTTAAG	1 cut(s)	562
NdeII	GATC	1 cut(s)	429
NlaIV	GGNNCC	1 cut(s)	583
NsiI	ATGCAT	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	469
PfeI	GAWTC	3 cut(s)	23, 500, 575
PleI	GAGTC	2 cut(s)	385, 391
PpsI	GAGTC	2 cut(s)	385, 391
PsiI	TTATAA	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	38, 93, 563
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	1 cut(s)	300
SchI	GAGTC	2 cut(s)	386, 392
SduI	GDGCHC	3 cut(s)	119, 178, 227
SetI	ASST	8 cut(s)	51, 227, 266, 288, 347, 425, 483, 587
SfaNI	GCATC	3 cut(s)	7, 137, 220
SmlI	CTYRAG	3 cut(s)	50, 444, 562
SmoI	CTYRAG	3 cut(s)	50, 444, 562
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	2 cut(s)	150, 213
SstI	GAGCTC	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	3 cut(s)	473, 498, 573
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	489
TfiI	GAWTC	3 cut(s)	23, 500, 575
Tru1I	TTAA	3 cut(s)	38, 93, 563
Tru9I	TTAA	3 cut(s)	38, 93, 563
TscAI	CASTG	1 cut(s)	87
TspDTI	ATGAA	2 cut(s)	79, 529
TspRI	CASTG	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.