Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Forward (+)

12477948 .. 12480160

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG075600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTTAGAGTCAAATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAACATCTGTCTTCAGTTTTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGAAAGAAGCTATTAAAGTATCTTCGAAGAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCAAACTTGGTCTCCGGGACACGCCAGATGTCAAACAAGAGTACAAGAAACATTACAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

85

Amino Acids

9.98

Weight (kDa)

10.1

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S15	PF00312	3 - 70	6.1e-22	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	35, 116
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	157
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	2 cut(s)	63, 104
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	209
BmrI	ACTGGG	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	2 cut(s)	63, 104
Bpu14I	TTCGAA	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	145
BsgI	GTGCAG	2 cut(s)	9, 146
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	2 cut(s)	185, 224
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	2 cut(s)	185, 224
BsmI	GAATGC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	207
BstV2I	GAAGAC	2 cut(s)	63, 104
Csp6I	GTAC	1 cut(s)	235
CviJI	RGCY	1 cut(s)	142
CviKI_1	RGCY	1 cut(s)	142
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	57
FaqI	GGGAC	2 cut(s)	185, 224
HapII	CCGG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	8, 173
HpaII	CCGG	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	26, 127
HpyF3I	CTNAG	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	57
LpnPI	CCDG	3 cut(s)	154, 221, 231
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	4 cut(s)	63, 104, 146, 171
MluCI	AATT	2 cut(s)	13, 253
MlyI	GAGTC	2 cut(s)	17, 167
MnlI	CCTC	1 cut(s)	123
MseI	TTAA	3 cut(s)	105, 146, 256
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	57
NspV	TTCGAA	1 cut(s)	157
PctI	GAATGC	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	207
PleI	GAGTC	2 cut(s)	16, 167
PpsI	GAGTC	2 cut(s)	16, 167
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	3 cut(s)	105, 146, 256
Sau3AI	GATC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	17, 167
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	13, 253
StyD4I	CCNGG	1 cut(s)	207
TaqI	TCGA	1 cut(s)	157
TasI	AATT	2 cut(s)	13, 253
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	3 cut(s)	105, 146, 256
Tru9I	TTAA	3 cut(s)	105, 146, 256
Vha464I	CTTAAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.