Rh2DG387800

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001441
Physical Location & Seq
Reverse (-)
56158480 .. 56163930
5451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG387800.1

Sequence Viewer

Length: 1323 bp
ATGATGGCTCTCCGACTGAGAACCAACCACCGAACCCTCACAAACCCATCTCTCATTCACCTCTTCTCGACTTCCTCCCCAGACCCATCCGACTCAACCGACCCAACTGAACCCAACCCCCAGTCCGACTCCTCCTCTCTCTCCAATTACTTCAGCGATGTCAAAGCCAGCCTCAGGCAACAGTCACAGTCACAGTCACAGCAACAACACAGCAGACCCACTTCATACTCACAGCAACAACACTTCAGACCCACTTCTCAGAACAACAACCCTTCTCTCTCCCGGCCTTCCAAGGCTGCCTCTTTGGAGGAAATCCGCAAAAACCTTGCGGAGTTTCGGCTTCGATCCATTGGGCCAAACCCCACTGAATCAAACTCTGCACCTCCACCTCCACCTCCACCTCCACCTCCGAACCCCATTTCGTTTGAGAAGCTCTATAACAAAGGCGTGAGCAGCGGCAAGATGGAGTTTCAGACGGTTCGGGAGAGTCTGAAGCTCATAAGGCCCAATGCGAATGAGCAGAATGAGAGGAAGGGTAGGGGATTGTCGTTGTTGAGGTTCAAAAGTTTGGATATGAATCCGAGCCAGGATGTGGGTGTTAGGAAGGGAGCATTTACAAGTTTTTTTGATAAGGAGAAGGAGAGAAGTGGAGAGAAGAGCTTGAATGCATTGAAGACTGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGGAAGTTGAGGCCCGAGGAAGGGAAGGAAGGGGGCGGGTTTACATTGGGGGAGTTCAGTGAGAGGTTGGTCAAGTTGAGGAAGATGGAAGAGAATGAGTCCGAGTCTTGGGTTGGGGGATTGAATACTAACTTGACGCAGAGCTTGTTGAAGATATCCGCGGAGGAGAAACATAGGAAAACTCCGATGCAGAGGCTTCATATGATAGATATAGGTCAAACTCCTGATTATATGATGAAAACCCCAAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGATAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAGTTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAGCATCTATCTTCAGTTCTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGGAAGAAGCTATTAAAGTATCTCCGAAGAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCGAACTTGGTCTCCGGGACACGCCAGATGCCAAACAAGAGTACAAGAAACATTACAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

440

Amino Acids

50.16

Weight (kDa)

9.69

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 350 - 425 2.8e-23 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 592
AccII CGCG 1 cut(s) 884
AciI CCGC 6 cut(s) 316, 329, 456, 759, 882, 884
AclWI GGATC 1 cut(s) 339
AcuI CTGAAG 4 cut(s) 136, 229, 512, 1122
AfaI GTAC 1 cut(s) 1301
AfiI CCNNNNNNNGG 6 cut(s) 174, 592, 743, 744, 831, 974
AflII CTTAAG 1 cut(s) 1169
AflIII ACRYGT 1 cut(s) 1008
AgsI TTSAA 7 cut(s) 562, 664, 673, 847, 874, 1100, 1181
AjnI CCWGG 1 cut(s) 585
AloI GAACNNNNNNTCC 2 cut(s) 1254, 1286
AluBI AGCT 9 cut(s) 433, 496, 660, 699, 721, 867, 1027, 1039, 1207
AluI AGCT 9 cut(s) 433, 496, 660, 699, 721, 867, 1027, 1039, 1207
Alw26I GTCTC 1 cut(s) 1274
AlwI GGATC 1 cut(s) 339
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 4 cut(s) 284, 353, 503, 734
ApeKI GCWGC 2 cut(s) 296, 453
Asp700I GAANNNNTTC 1 cut(s) 992
AspS9I GGNCC 3 cut(s) 353, 504, 735
AsuC2I CCSGG 2 cut(s) 283, 1274
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 737
AxyI CCTNAGG 1 cut(s) 173
BauI CACGAG 1 cut(s) 1092
BbsI GAAGAC 3 cut(s) 680, 1005, 1169
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 2 cut(s) 283, 465
BccI CCATC 5 cut(s) 55, 94, 457, 802, 1005
BciT130I CCWGG 1 cut(s) 587
BcnI CCSGG 2 cut(s) 283, 1274
BcoDI GTCTC 1 cut(s) 1274
BfmI CTRYAG 1 cut(s) 1017
BfrI CTTAAG 1 cut(s) 1169
BisI GCNGC 3 cut(s) 297, 454, 457
BlsI GCNGC 3 cut(s) 298, 455, 458
Bme1390I CCNGG 3 cut(s) 283, 587, 1274
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 3 cut(s) 353, 504, 735
BmrFI CCNGG 3 cut(s) 283, 587, 1274
BmrI ACTGGG 2 cut(s) 115, 1243
BmsI GCATC 3 cut(s) 900, 1138, 1276
BmuI ACTGGG 2 cut(s) 115, 1243
BpiI GAAGAC 3 cut(s) 680, 1005, 1169
Bpu10I CCTNAGC 1 cut(s) 722
BpuMI CCSGG 2 cut(s) 283, 1274
BsaBI GATNNNNATC 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 1274
BsaJI CCNNGG 3 cut(s) 291, 738, 882
BsaXI ACNNNNNCTCC 2 cut(s) 1254, 1284
Bsc4I CCNNNNNNNGG 6 cut(s) 174, 592, 743, 744, 831, 974
Bse1I ACTGG 2 cut(s) 121, 1238
Bse21I CCTNAGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 1191
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 3 cut(s) 291, 738, 882
BseGI GGATG 3 cut(s) 86, 595, 997
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 6 cut(s) 174, 592, 743, 744, 831, 974
BseMI GCAATG 1 cut(s) 1191
BseMII CTCAG 5 cut(s) 8, 187, 272, 669, 713
BseNI ACTGG 2 cut(s) 121, 1238
BseRI GAGGAG 4 cut(s) 121, 124, 902, 1210
BseXI GCAGC 2 cut(s) 283, 465
BsgI GTGCAG 3 cut(s) 363, 1074, 1211
Bsh1236I CGCG 1 cut(s) 884
BshFI GGCC 4 cut(s) 286, 355, 505, 736
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 2 cut(s) 283, 1273
BslFI GGGAC 2 cut(s) 1250, 1289
BslI CCNNNNNNNGG 6 cut(s) 174, 592, 743, 744, 831, 974
BsmAI GTCTC 1 cut(s) 1274
BsmFI GGGAC 2 cut(s) 1250, 1289
BsmI GAATGC 2 cut(s) 670, 1162
BsnI GGCC 4 cut(s) 286, 355, 505, 736
Bso31I GGTCTC 1 cut(s) 1274
BsoBI CYCGRG 1 cut(s) 737
Bsp143I GATC 2 cut(s) 344, 1122
BspACI CCGC 6 cut(s) 316, 329, 456, 759, 882, 884
BspANI GGCC 4 cut(s) 286, 355, 505, 736
BspCNI CTCAG 5 cut(s) 9, 186, 271, 670, 714
BspFNI CGCG 1 cut(s) 884
BspMAI CTGCAG 1 cut(s) 1021
BspPI GGATC 1 cut(s) 339
BspQI GCTCTTC 1 cut(s) 650
BspTI CTTAAG 1 cut(s) 1169
BspTNI GGTCTC 1 cut(s) 1274
BsrDI GCAATG 1 cut(s) 1191
BsrI ACTGG 2 cut(s) 121, 1238
BssECI CCNNGG 3 cut(s) 291, 738, 882
BssMI GATC 2 cut(s) 344, 1122
BssSI CACGAG 1 cut(s) 1092
BssT1I CCWWGG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 1092
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 4 cut(s) 183, 189, 195, 478
Bst6I CTCTTC 3 cut(s) 68, 650, 807
BstAFI CTTAAG 1 cut(s) 1169
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 6 cut(s) 17, 173, 258, 678, 722, 1119
BstDSI CCRYGG 1 cut(s) 882
BstF5I GGATG 3 cut(s) 86, 595, 997
BstFNI CGCG 1 cut(s) 884
BstKTI GATC 2 cut(s) 347, 1125
BstMAI GTCTC 1 cut(s) 1274
BstMBI GATC 2 cut(s) 344, 1122
BstMWI GCNNNNNNNGC 2 cut(s) 453, 502
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 1 cut(s) 1012
BstSCI CCNGG 3 cut(s) 281, 585, 1272
BstSFI CTRYAG 1 cut(s) 1017
BstUI CGCG 1 cut(s) 884
BstV1I GCAGC 2 cut(s) 283, 465
BstV2I GAAGAC 3 cut(s) 680, 1005, 1169
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 4 cut(s) 286, 355, 505, 736
BtgI CCRYGG 1 cut(s) 882
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 3 cut(s) 86, 595, 997
BtsIMutI CAGTG 2 cut(s) 363, 787
Cac8I GCNNGC 1 cut(s) 169
Cfr13I GGNCC 3 cut(s) 353, 504, 735
Cfr42I CCGCGG 1 cut(s) 885
CseI GACGC 1 cut(s) 868
Csp6I GTAC 1 cut(s) 1300
CviAII CATG 1 cut(s) 1009
CviQI GTAC 1 cut(s) 1300
DdeI CTNAG 6 cut(s) 17, 173, 258, 678, 722, 1119
DpnI GATC 2 cut(s) 346, 1124
DpnII GATC 2 cut(s) 344, 1122
DraI TTTAAA 1 cut(s) 1063
Eam1104I CTCTTC 3 cut(s) 68, 650, 807
EarI CTCTTC 3 cut(s) 68, 650, 807
Eco130I CCWWGG 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 1274
Eco32I GATATC 1 cut(s) 879
Eco57I CTGAAG 4 cut(s) 136, 229, 512, 1122
Eco81I CCTNAGG 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 585
EcoRV GATATC 1 cut(s) 879
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 1 cut(s) 1012
FalI AAGNNNNNCTT 2 cut(s) 962, 994
FaqI GGGAC 2 cut(s) 1250, 1289
FatI CATG 1 cut(s) 1008
FauI CCCGC 1 cut(s) 752
FauNDI CATATG 1 cut(s) 924
Fnu4HI GCNGC 3 cut(s) 297, 454, 457
FokI GGATG 3 cut(s) 73, 602, 984
Fsp4HI GCNGC 3 cut(s) 297, 454, 457
GluI GCNGC 3 cut(s) 297, 454, 457
HaeIII GGCC 4 cut(s) 286, 355, 505, 736
HapII CCGG 2 cut(s) 283, 1273
HgaI GACGC 1 cut(s) 868
Hin1II CATG 1 cut(s) 1012
HinfI GANTC 9 cut(s) 92, 128, 368, 487, 577, 821, 827, 1073, 1238
HpaII CCGG 2 cut(s) 283, 1273
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 765
Hpy188III TCNNGA 4 cut(s) 67, 482, 947, 1001
Hpy8I GTNNAC 1 cut(s) 765
HpyAV CCTTC 9 cut(s) 282, 297, 526, 598, 631, 737, 742, 746, 968
HpyCH4III ACNGT 4 cut(s) 183, 189, 195, 478
HpyCH4V TGCA 6 cut(s) 380, 668, 913, 1019, 1091, 1192
HpyF10VI GCNNNNNNNGC 2 cut(s) 453, 502
HpyF3I CTNAG 6 cut(s) 17, 173, 258, 678, 722, 1119
Hsp92II CATG 1 cut(s) 1012
KspI CCGCGG 1 cut(s) 885
Kzo9I GATC 2 cut(s) 344, 1122
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 2 cut(s) 283, 465
LweI GCATC 3 cut(s) 900, 1138, 1276
MaeIII GTNAC 3 cut(s) 183, 189, 195
MalI GATC 2 cut(s) 346, 1124
MboI GATC 2 cut(s) 344, 1122
MluCI AATT 3 cut(s) 145, 1032, 1318
MlyI GAGTC 7 cut(s) 86, 122, 496, 830, 836, 1082, 1232
MmeI TCCRAC 3 cut(s) 37, 114, 150
Mph1103I ATGCAT 1 cut(s) 670
MroXI GAANNNNTTC 1 cut(s) 992
MseI TTAA 3 cut(s) 1062, 1170, 1211
MspA1I CMGCKG 2 cut(s) 456, 884
MspCI CTTAAG 1 cut(s) 1169
MspI CCGG 2 cut(s) 283, 1273
MspR9I CCNGG 3 cut(s) 283, 587, 1274
Mva1269I GAATGC 2 cut(s) 670, 1162
MvaI CCWGG 1 cut(s) 587
MvnI CGCG 1 cut(s) 884
MwoI GCNNNNNNNGC 2 cut(s) 453, 502
NciI CCSGG 2 cut(s) 283, 1274
NdeI CATATG 1 cut(s) 924
NdeII GATC 2 cut(s) 344, 1122
NlaIII CATG 1 cut(s) 1012
NmuCI GTSAC 3 cut(s) 183, 189, 195
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 1 cut(s) 1012
PciI ACATGT 1 cut(s) 1008
PciSI GCTCTTC 1 cut(s) 650
PctI GAATGC 2 cut(s) 670, 1162
PdmI GAANNNNTTC 1 cut(s) 992
PfeI GAWTC 2 cut(s) 368, 577
PflMI CCANNNNNTGG 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 1272
PkrI GCNGC 3 cut(s) 298, 455, 458
PleI GAGTC 7 cut(s) 86, 122, 495, 829, 835, 1081, 1232
PpsI GAGTC 7 cut(s) 86, 122, 495, 829, 835, 1081, 1232
PscI ACATGT 1 cut(s) 1008
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspPI GGNCC 3 cut(s) 353, 504, 735
PstI CTGCAG 1 cut(s) 1021
RsaI GTAC 1 cut(s) 1301
RsaNI GTAC 1 cut(s) 1300
SacII CCGCGG 1 cut(s) 885
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 3 cut(s) 1062, 1170, 1211
SatI GCNGC 3 cut(s) 297, 454, 457
Sau3AI GATC 2 cut(s) 344, 1122
Sau96I GGNCC 3 cut(s) 353, 504, 735
SchI GAGTC 7 cut(s) 86, 122, 496, 830, 836, 1082, 1232
ScrFI CCNGG 3 cut(s) 283, 587, 1274
SfaNI GCATC 3 cut(s) 900, 1138, 1276
SfcI CTRYAG 1 cut(s) 1017
Sfr303I CCGCGG 1 cut(s) 885
SgrBI CCGCGG 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
Sse9I AATT 3 cut(s) 145, 1032, 1318
SsiI CCGC 6 cut(s) 316, 329, 456, 759, 882, 884
StyD4I CCNGG 3 cut(s) 281, 585, 1272
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 4 cut(s) 183, 189, 195, 478
TaqI TCGA 2 cut(s) 68, 343
TasI AATT 3 cut(s) 145, 1032, 1318
TatI WGTACW 1 cut(s) 1299
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 2 cut(s) 368, 577
Tru1I TTAA 3 cut(s) 1062, 1170, 1211
Tru9I TTAA 3 cut(s) 1062, 1170, 1211
TscAI CASTG 2 cut(s) 370, 787
TseFI GTSAC 3 cut(s) 183, 189, 195
TseI GCWGC 2 cut(s) 296, 453
Tsp45I GTSAC 3 cut(s) 183, 189, 195
TspDTI ATGAA 4 cut(s) 213, 590, 911, 974
TspRI CASTG 2 cut(s) 370, 787
Van91I CCANNNNNTGG 1 cut(s) 592
Vha464I CTTAAG 1 cut(s) 1169
XceI RCATGY 1 cut(s) 1012
XmnI GAANNNNTTC 1 cut(s) 992
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.