Rmu_sc0017417.1_g000001

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017417.1
OG0001441
Physical Location & Seq
Reverse (-)
2 .. 371
370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017417.1_g000001.1.cds

Sequence Viewer

Length: 370 bp
atgatggctctccgactgagaaccaaccaccgaaccctcacaaacccatctctcattcacctcttctcgacttcctccccagacccatccgactcaaccgacccaactgaacccaacccccagtccgactcctcctctctctccaattacttcagcgatgtcaaagccagcctcaggcaacagtcacagtcacagtcacagcaacaacacttcagacccacttctcagaacaacaacccttctctctcccggccttccaaggctgcctctttggaggaaatccgcaaaaaccttgcggagtttcggcttcgatccattgggccaaaccccactgaatcaaactctgcacctccacctccacctccacctc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

123

Amino Acids

13.56

Weight (kDa)

9.51

Isoelectric Point (pI)

88.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 283, 296
AclWI GGATC 1 cut(s) 306
AcuI CTGAAG 2 cut(s) 136, 196
AfiI CCNNNNNNNGG 1 cut(s) 174
AlwI GGATC 1 cut(s) 306
AoxI GGCC 2 cut(s) 251, 320
ApeKI GCWGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 173
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 55, 94
BcnI CCSGG 1 cut(s) 250
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 250
BmrI ACTGGG 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 121
Bse21I CCTNAGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 8, 187, 239
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 121, 124
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 2 cut(s) 253, 322
BsiSI CCGG 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 174
BsnI GGCC 2 cut(s) 253, 322
Bsp143I GATC 1 cut(s) 311
BspACI CCGC 2 cut(s) 283, 296
BspANI GGCC 2 cut(s) 253, 322
BspCNI CTCAG 3 cut(s) 9, 186, 238
BspPI GGATC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 258
Bst4CI ACNGT 3 cut(s) 183, 189, 195
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 17, 173, 225
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 1 cut(s) 314
BstMBI GATC 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 2 cut(s) 253, 322
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 320
CviJI RGCY 7 cut(s) 8, 167, 171, 253, 263, 307, 322
CviKI_1 RGCY 7 cut(s) 8, 167, 171, 253, 263, 307, 322
DdeI CTNAG 3 cut(s) 17, 173, 225
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 258
Eco57I CTGAAG 2 cut(s) 136, 196
Eco81I CCTNAGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 2 cut(s) 253, 322
HapII CCGG 1 cut(s) 250
HinfI GANTC 3 cut(s) 92, 128, 335
HpaII CCGG 1 cut(s) 250
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 5 cut(s) 14, 91, 127, 215, 228
Hpy188III TCNNGA 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 249, 264
HpyCH4III ACNGT 3 cut(s) 183, 189, 195
HpyCH4V TGCA 1 cut(s) 347
HpyF3I CTNAG 3 cut(s) 17, 173, 225
Kzo9I GATC 1 cut(s) 311
LpnPI CCDG 5 cut(s) 93, 134, 160, 181, 263
Lsp1109I GCAGC 1 cut(s) 250
MaeIII GTNAC 3 cut(s) 183, 189, 195
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 1 cut(s) 55
MluCI AATT 1 cut(s) 145
MlyI GAGTC 2 cut(s) 86, 122
MmeI TCCRAC 3 cut(s) 37, 114, 150
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 250
NciI CCSGG 1 cut(s) 250
NdeII GATC 1 cut(s) 311
NmuCI GTSAC 3 cut(s) 183, 189, 195
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 2 cut(s) 86, 122
PpsI GAGTC 2 cut(s) 86, 122
PspPI GGNCC 1 cut(s) 320
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 311
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 2 cut(s) 86, 122
ScrFI CCNGG 1 cut(s) 250
SetI ASST 6 cut(s) 63, 294, 352, 358, 364, 370
SgeI CNNG 9 cut(s) 79, 92, 133, 180, 187, 261, 262, 271, 305
Sse9I AATT 1 cut(s) 145
SsiI CCGC 2 cut(s) 283, 296
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 3 cut(s) 183, 189, 195
TaqI TCGA 2 cut(s) 68, 310
TasI AATT 1 cut(s) 145
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 3 cut(s) 183, 189, 195
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 3 cut(s) 183, 189, 195
TspRI CASTG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.