Rmu_sc0016639.1_g000001

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016639.1
OG0001441
Physical Location & Seq
Forward (+)
1 .. 4115
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016639.1_g000001.1.cds

Sequence Viewer

Length: 938 bp
cacctccacctccacctccacctccgaaccccatttcgtttgagaagctctataacaaaggcgtgagcagccgcaagatggagtttcagacggttcgggagagtctgaagctcataaggcccaatgcgaatgagcagaatgagaggaagggtaggggattgtcgttgttgaggttcaaaagtttggatatgaatccgagccaggatgtgggtgttaggaagggagcacttacaagtctttttgataaggagaaggagagaagtggagagaagagcttggatgcattgaagactgagtttgtgaagatttatagctataaagagttgggggagaagctgaggaagttgaggcccgaggaagggaaggaagggggcgggtttacattgggggagttcagtgagaggttggtcaagttgaggaagatggaagagaatgagtccgtgtcttgggttgggggattgaatactaacttgacgcagagcttgttgaagatagccgcggaggagaagcataggaaaactccgatgcagaggcttcatatgatagatataggtcaaactcctgattatatgatgaaacccccaaaggaaggcttggttgagaagtatttccatccagataacatgtcttctgcagaaaagctgaaaattgagcttggcaaagttagagatgagtttaaaatgtcagactcagattgtggttctgcacgagttcaagtggcacaactcacaactaagatcaagcatctatcttcagttctacacaaaaaggataagcattcacttaagggtcttcaagcaatggtgcagaggaggaaaaagctattaaagtatctccgaagaactgactgggactcttactgccttgttctctccaaacttggtctccgggacacgccagatgccaaacaagagtacaagaaacattacaagaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

311

Amino Acids

35.77

Weight (kDa)

9.75

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AccII CGCG 1 cut(s) 499
AciI CCGC 4 cut(s) 72, 374, 497, 499
AcuI CTGAAG 2 cut(s) 127, 737
AfaI GTAC 1 cut(s) 916
AfiI CCNNNNNNNGG 6 cut(s) 78, 207, 358, 359, 446, 589
AflII CTTAAG 1 cut(s) 784
AflIII ACRYGT 1 cut(s) 623
AgsI TTSAA 6 cut(s) 177, 288, 462, 489, 715, 796
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 9 cut(s) 48, 111, 275, 314, 336, 482, 642, 654, 822
AluI AGCT 9 cut(s) 48, 111, 275, 314, 336, 482, 642, 654, 822
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 889
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 2 cut(s) 118, 349
ApeKI GCWGC 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 607
AspS9I GGNCC 2 cut(s) 119, 350
AsuC2I CCSGG 1 cut(s) 889
AvaI CYCGRG 1 cut(s) 352
BauI CACGAG 1 cut(s) 707
BbsI GAAGAC 3 cut(s) 295, 620, 784
Bbv12I GWGCWC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 80
BccI CCATC 3 cut(s) 72, 417, 620
BciT130I CCWGG 1 cut(s) 202
BcnI CCSGG 1 cut(s) 889
BcoDI GTCTC 1 cut(s) 889
BfmI CTRYAG 1 cut(s) 632
BfrI CTTAAG 1 cut(s) 784
BisI GCNGC 3 cut(s) 69, 72, 497
BlsI GCNGC 3 cut(s) 70, 73, 498
Bme1390I CCNGG 2 cut(s) 202, 889
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 119, 350
BmrFI CCNGG 2 cut(s) 202, 889
BmrI ACTGGG 1 cut(s) 858
BmsI GCATC 4 cut(s) 270, 515, 753, 891
BmuI ACTGGG 1 cut(s) 858
BpiI GAAGAC 3 cut(s) 295, 620, 784
Bpu10I CCTNAGC 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 889
BsaBI GATNNNNATC 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 889
BsaJI CCNNGG 2 cut(s) 353, 497
BsaXI ACNNNNNCTCC 2 cut(s) 869, 899
Bsc4I CCNNNNNNNGG 6 cut(s) 78, 207, 358, 359, 446, 589
Bse1I ACTGG 1 cut(s) 853
Bse3DI GCAATG 1 cut(s) 806
Bse8I GATNNNNATC 1 cut(s) 191
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 353, 497
BseGI GGATG 3 cut(s) 210, 285, 612
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 6 cut(s) 78, 207, 358, 359, 446, 589
BseMI GCAATG 1 cut(s) 806
BseMII CTCAG 3 cut(s) 284, 328, 704
BseNI ACTGG 1 cut(s) 853
BseRI GAGGAG 2 cut(s) 517, 825
BseXI GCAGC 1 cut(s) 80
BsgI GTGCAG 2 cut(s) 689, 826
Bsh1236I CGCG 1 cut(s) 499
BshFI GGCC 2 cut(s) 120, 351
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 888
BslFI GGGAC 2 cut(s) 865, 904
BslI CCNNNNNNNGG 6 cut(s) 78, 207, 358, 359, 446, 589
BsmAI GTCTC 1 cut(s) 889
BsmFI GGGAC 2 cut(s) 865, 904
BsmI GAATGC 1 cut(s) 777
BsnI GGCC 2 cut(s) 120, 351
Bso31I GGTCTC 1 cut(s) 889
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 737
BspACI CCGC 4 cut(s) 72, 374, 497, 499
BspANI GGCC 2 cut(s) 120, 351
BspCNI CTCAG 3 cut(s) 285, 329, 703
BspFNI CGCG 1 cut(s) 499
BspMAI CTGCAG 1 cut(s) 636
BspQI GCTCTTC 1 cut(s) 265
BspTI CTTAAG 1 cut(s) 784
BspTNI GGTCTC 1 cut(s) 889
BsrDI GCAATG 1 cut(s) 806
BsrI ACTGG 1 cut(s) 853
BssECI CCNNGG 2 cut(s) 353, 497
BssMI GATC 1 cut(s) 737
BssSI CACGAG 1 cut(s) 707
Bst2BI CACGAG 1 cut(s) 707
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 265, 422
BstAFI CTTAAG 1 cut(s) 784
BstDEI CTNAG 4 cut(s) 293, 337, 690, 734
BstDSI CCRYGG 1 cut(s) 497
BstF5I GGATG 3 cut(s) 210, 285, 612
BstFNI CGCG 1 cut(s) 499
BstKTI GATC 1 cut(s) 740
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 1 cut(s) 737
BstMWI GCNNNNNNNGC 2 cut(s) 68, 117
BstNI CCWGG 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 2 cut(s) 200, 887
BstSFI CTRYAG 1 cut(s) 632
BstUI CGCG 1 cut(s) 499
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 3 cut(s) 295, 620, 784
BsuRI GGCC 2 cut(s) 120, 351
BtgI CCRYGG 1 cut(s) 497
BtsCI GGATG 3 cut(s) 210, 285, 612
BtsIMutI CAGTG 1 cut(s) 402
Cfr13I GGNCC 2 cut(s) 119, 350
Cfr42I CCGCGG 1 cut(s) 500
CseI GACGC 1 cut(s) 483
Csp6I GTAC 1 cut(s) 915
CviAII CATG 1 cut(s) 624
CviQI GTAC 1 cut(s) 915
DdeI CTNAG 4 cut(s) 293, 337, 690, 734
DpnI GATC 1 cut(s) 739
DpnII GATC 1 cut(s) 737
DraI TTTAAA 1 cut(s) 678
Eam1104I CTCTTC 2 cut(s) 265, 422
EarI CTCTTC 2 cut(s) 265, 422
Eco31I GGTCTC 1 cut(s) 889
Eco57I CTGAAG 2 cut(s) 127, 737
Eco88I CYCGRG 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 285
FaeI CATG 1 cut(s) 627
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FaqI GGGAC 2 cut(s) 865, 904
FatI CATG 1 cut(s) 623
FauI CCCGC 1 cut(s) 367
FauNDI CATATG 1 cut(s) 539
Fnu4HI GCNGC 3 cut(s) 69, 72, 497
FokI GGATG 3 cut(s) 217, 292, 599
Fsp4HI GCNGC 3 cut(s) 69, 72, 497
GluI GCNGC 3 cut(s) 69, 72, 497
HaeIII GGCC 2 cut(s) 120, 351
HapII CCGG 1 cut(s) 888
HgaI GACGC 1 cut(s) 483
Hin1II CATG 1 cut(s) 627
HinfI GANTC 5 cut(s) 102, 192, 436, 688, 853
HpaII CCGG 1 cut(s) 888
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 8 cut(s) 26, 89, 107, 197, 524, 687, 693, 838
Hpy188III TCNNGA 3 cut(s) 97, 562, 616
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 7 cut(s) 141, 213, 246, 352, 357, 361, 583
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 5 cut(s) 283, 528, 634, 706, 807
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 117
HpyF3I CTNAG 4 cut(s) 293, 337, 690, 734
Hsp92II CATG 1 cut(s) 627
KspI CCGCGG 1 cut(s) 500
Kzo9I GATC 1 cut(s) 737
LguI GCTCTTC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 7 cut(s) 187, 214, 575, 629, 834, 901, 911
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 4 cut(s) 270, 515, 753, 891
MalI GATC 1 cut(s) 739
MboI GATC 1 cut(s) 737
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 2 cut(s) 647, 933
MlyI GAGTC 4 cut(s) 111, 445, 682, 847
Mph1103I ATGCAT 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 607
MseI TTAA 3 cut(s) 677, 785, 826
MspA1I CMGCKG 1 cut(s) 499
MspCI CTTAAG 1 cut(s) 784
MspI CCGG 1 cut(s) 888
MspR9I CCNGG 2 cut(s) 202, 889
Mva1269I GAATGC 1 cut(s) 777
MvaI CCWGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 499
MwoI GCNNNNNNNGC 2 cut(s) 68, 117
NciI CCSGG 1 cut(s) 889
NdeI CATATG 1 cut(s) 539
NdeII GATC 1 cut(s) 737
NlaIII CATG 1 cut(s) 627
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 1 cut(s) 627
PciI ACATGT 1 cut(s) 623
PciSI GCTCTTC 1 cut(s) 265
PctI GAATGC 1 cut(s) 777
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 1 cut(s) 192
PflMI CCANNNNNTGG 1 cut(s) 207
PfoI TCCNGGA 1 cut(s) 887
PkrI GCNGC 3 cut(s) 70, 73, 498
PleI GAGTC 4 cut(s) 110, 444, 682, 847
PpsI GAGTC 4 cut(s) 110, 444, 682, 847
PscI ACATGT 1 cut(s) 623
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspPI GGNCC 2 cut(s) 119, 350
PstI CTGCAG 1 cut(s) 636
RsaI GTAC 1 cut(s) 916
RsaNI GTAC 1 cut(s) 915
SacII CCGCGG 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 3 cut(s) 677, 785, 826
SatI GCNGC 3 cut(s) 69, 72, 497
Sau3AI GATC 1 cut(s) 737
Sau96I GGNCC 2 cut(s) 119, 350
SchI GAGTC 4 cut(s) 111, 445, 682, 847
ScrFI CCNGG 2 cut(s) 202, 889
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 4 cut(s) 270, 515, 753, 891
SfcI CTRYAG 1 cut(s) 632
Sfr303I CCGCGG 1 cut(s) 500
SgrBI CCGCGG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 784
SmoI CTYRAG 1 cut(s) 784
Sse9I AATT 2 cut(s) 647, 933
SsiI CCGC 4 cut(s) 72, 374, 497, 499
StyD4I CCNGG 2 cut(s) 200, 887
TaaI ACNGT 1 cut(s) 93
TasI AATT 2 cut(s) 647, 933
TatI WGTACW 1 cut(s) 914
TauI GCSGC 2 cut(s) 74, 499
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 3 cut(s) 677, 785, 826
Tru9I TTAA 3 cut(s) 677, 785, 826
TscAI CASTG 1 cut(s) 402
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 205, 526, 589
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 1 cut(s) 402
Van91I CCANNNNNTGG 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 784
XceI RCATGY 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 607
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.