Rh4BG143600

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001441
Physical Location & Seq
Reverse (-)
25541457 .. 25546115
4659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG143600.1

Sequence Viewer

Length: 735 bp
ATGGAGTTTCAGACGATTCGGGAGAGTCTGAAGCTTATAAAGCCCAATGCCGATGAGCAGAATGAGAGGAAGGGTGAGGGTTTGCCGTTGTTGAGGTTTCCGAAAAGTTTGGATATGAATCCCAGCCAGGATGCGGGTGTTAGCAAGGGAGCACTTCCGAGTTTGTTTTATAAGGACAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGCAAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTGTATGTGGACGTCAAGCACAGCTTGGAGATCTTGAAGATATCTCAAGAAGAGGAGAAGCATAGGAAAACTTCGAGGCAGAGGCTTCGTATCATAGATATAGGTCAAACTCCTGAGTATATGATGAAACCCCCGAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGATAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGGTATGGGTTTTGATATTGTATTTTACTACACCTTTTTTTTAGTCATAGAAGAAAGCATTTTTTGTATTCTCATTCTTACTATACAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

244

Amino Acids

28.14

Weight (kDa)

5.86

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 38, 171
AatII GACGTC 1 cut(s) 390
AciI CCGC 2 cut(s) 134, 189
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 387
AfiI CCNNNNNNNGG 4 cut(s) 133, 284, 285, 515
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 3 cut(s) 214, 412, 641
AjnI CCWGG 1 cut(s) 126
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 7 cut(s) 34, 201, 240, 262, 399, 568, 580
AluI AGCT 7 cut(s) 34, 201, 240, 262, 399, 568, 580
Alw21I GWGCWC 2 cut(s) 154, 203
Alw26I GTCTC 2 cut(s) 186, 366
Ama87I CYCGRG 2 cut(s) 278, 363
AoxI GGCC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 2 cut(s) 278, 363
BanII GRGCYC 1 cut(s) 203
BauI CACGAG 1 cut(s) 633
BbsI GAAGAC 2 cut(s) 221, 546
Bbv12I GWGCWC 2 cut(s) 154, 203
BccI CCATC 2 cut(s) 334, 546
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 186, 366
BfmI CTRYAG 1 cut(s) 558
BglII AGATCT 1 cut(s) 405
BlpI GCTNAGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 128
BmeT110I CYCGRG 2 cut(s) 278, 363
BmgT120I GGNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 2 cut(s) 121, 196
BpiI GAAGAC 2 cut(s) 221, 546
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 405
BsaBI GATNNNNATC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 284, 285, 515
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 4 cut(s) 136, 211, 342, 538
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 4 cut(s) 133, 284, 285, 515
BseMII CTCAG 3 cut(s) 254, 348, 480
BseRI GAGGAG 2 cut(s) 296, 443
BseYI CCCAGC 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 154, 203
BsiHKCI CYCGRG 2 cut(s) 278, 363
BslI CCNNNNNNNGG 4 cut(s) 133, 284, 285, 515
BsmAI GTCTC 2 cut(s) 186, 366
BsnI GGCC 1 cut(s) 277
BsoBI CYCGRG 2 cut(s) 278, 363
Bsp1286I GDGCHC 2 cut(s) 154, 203
Bsp143I GATC 1 cut(s) 405
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 2 cut(s) 134, 189
BspANI GGCC 1 cut(s) 277
BspCNI CTCAG 3 cut(s) 255, 349, 481
BspMAI CTGCAG 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 405
BssNI GRCGYC 1 cut(s) 387
BssSI CACGAG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 633
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 339, 420
BstACI GRCGYC 1 cut(s) 387
BstDEI CTNAG 3 cut(s) 263, 357, 489
BstF5I GGATG 4 cut(s) 136, 211, 342, 538
BstKTI GATC 1 cut(s) 408
BstMAI GTCTC 2 cut(s) 186, 366
BstMBI GATC 1 cut(s) 405
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 558
BstV2I GAAGAC 2 cut(s) 221, 546
BstX2I RGATCY 1 cut(s) 405
BstYI RGATCY 1 cut(s) 405
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 4 cut(s) 136, 211, 342, 538
Cfr13I GGNCC 1 cut(s) 276
CviAII CATG 1 cut(s) 550
DdeI CTNAG 3 cut(s) 263, 357, 489
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
DraI TTTAAA 1 cut(s) 604
Eam1104I CTCTTC 2 cut(s) 339, 420
EarI CTCTTC 2 cut(s) 339, 420
Ecl136II GAGCTC 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 203
Eco32I GATATC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 2 cut(s) 278, 363
EcoICRI GAGCTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 126
EcoRV GATATC 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 203
FaeI CATG 1 cut(s) 553
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 503, 535
FatI CATG 1 cut(s) 549
FauI CCCGC 1 cut(s) 127
FokI GGATG 4 cut(s) 143, 218, 349, 525
FriOI GRGCYC 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 1 cut(s) 553
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 6 cut(s) 16, 25, 118, 353, 359, 614
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 297, 385
Hpy188I TCNGA 8 cut(s) 12, 30, 102, 159, 205, 358, 613, 619
Hpy188III TCNNGA 5 cut(s) 20, 409, 422, 488, 542
Hpy8I GTNNAC 2 cut(s) 297, 385
HpyAV CCTTC 4 cut(s) 64, 283, 505, 509
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 3 cut(s) 209, 560, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 3 cut(s) 263, 357, 489
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 1 cut(s) 553
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 5 cut(s) 113, 136, 140, 501, 555
LweI GCATC 2 cut(s) 121, 196
MaeII ACGT 1 cut(s) 387
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 7 cut(s) 226, 241, 356, 424, 437, 546, 704
MflI RGATCY 1 cut(s) 405
MhlI GDGCHC 2 cut(s) 154, 203
MluCI AATT 2 cut(s) 573, 599
MlyI GAGTC 4 cut(s) 34, 362, 368, 623
Mph1103I ATGCAT 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 1 cut(s) 603
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 1 cut(s) 405
NlaIII CATG 1 cut(s) 553
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 553
PciI ACATGT 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 2 cut(s) 16, 118
PleI GAGTC 4 cut(s) 33, 361, 367, 622
PpsI GAGTC 4 cut(s) 33, 361, 367, 622
PscI ACATGT 1 cut(s) 549
PsiI TTATAA 2 cut(s) 38, 171
Psp124BI GAGCTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 122
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 1 cut(s) 276
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 405
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 603
Sau3AI GATC 1 cut(s) 405
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 4 cut(s) 34, 362, 368, 623
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 2 cut(s) 154, 203
SfaNI GCATC 2 cut(s) 121, 196
SfcI CTRYAG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
Sse9I AATT 2 cut(s) 573, 599
SsiI CCGC 2 cut(s) 134, 189
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 390
TaqI TCGA 1 cut(s) 449
TaqII GACCGA 1 cut(s) 233
TasI AATT 2 cut(s) 573, 599
TfiI GAWTC 2 cut(s) 16, 118
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TspDTI ATGAA 3 cut(s) 131, 515, 612
XapI RAATTY 1 cut(s) 599
XceI RCATGY 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 533
ZraI GACGTC 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.