AT1G80620

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001441
Physical Location & Seq
Forward (+)
30305022 .. 30307453
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80620.1

Sequence Viewer

Length: 1245 bp
ATGGCGCTTCATCTCGCCAGACCAAAACAAAGGTTACATTCGAATCCATCTCTCATTCACCTTTTCTCAACCTCCTCCTCCTCCTCCTCATCATCACCTCAAGACGGGAACGAATCTAATGAACAGCCCTCTCAATCATCGTCGGATTATAAAATCTCTTCCTACTTCAGTGGTATCAGAAGCAGTCTCAAACAGACTCAGTCTCAGGACGGGAAGAGACAGTTCGTCAGATTCGATGCCAAACCTCAGAATTCGCTTTCCGGTAACCAGGATATCAGGAGGAATCTGAACGAGTTCCGAAGTAGAGCAACAGCTCCGCCGCCGAGGGATATGCAGGATCTTTTCAAGCAGAATGTGTTATCAAAATCTGGAGGGACTCGTAGAATCGAAGGTGTGCCATTAACAAACATAAAGGCGAACTTAAGGCAGATGAGACCACAACAAGCAACCACTGAGAGCAAATGGGCCAATTTATCTGGGATTCAGAACATTATGAAGACGAACATCAATGATAATATCCGTTCAAATGTAATCGGAGGAGCAGCAGAAGGATTGCCACATTCAGTGGTTGGGAAGGAGTTAGAAGAAGAAGATGTGACAGAGGAGGAGATGAAATCAGAGTTTATCAAGAGCTATGATCCAATAGAACTGGGAGAGAAACTAAGATTGTATAGGCCTGAGGGAAAGAAAGAAGAAGGTTGGTTCTCATTACAGGAGCTCAATCAGAGGCTTGTTAAGCTCAGGGCCATGGAAGAGGAACAATTCCAGAAAACGAGTATAGTGCATCCCTCCTTCGTCAACAACTTGAGGTCTGAGTTTCATAAGTTCACCAAGGCTCAGAAATCAGATCCCTTTCAGAATACGAATATTTGGGGAGTTTTAAGTGGTACCCCAAAGTATATGCTCGAGCCTCCAAAAGATCAACTAGTTGAAACTTATTTCCATCCGGATAACATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTCAGAGAAGAGTTCAAGATGTCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCGCAACTGACCACTAAGATCAAGCATCTATCCTCGGTTCTACATAAAAAGGACAAGCATTCGCGGAAAGGACTTATAGCAATGGTGCAGAGACGGAAGAAGCTGTTGAAGTATATGAGAAGAACGGACTGGGATTCTTACTGCCTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCGGATTACAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

414

Amino Acids

47.4

Weight (kDa)

9.6

Isoelectric Point (pI)

67.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 331 - 407 4.6e-24 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
Acc65I GGTACC 1 cut(s) 887
AccB1I GGYRCC 1 cut(s) 887
AccII CGCG 1 cut(s) 1114
AccIII TCCGGA 1 cut(s) 946
AciI CCGC 4 cut(s) 317, 320, 965, 1114
AclWI GGATC 3 cut(s) 345, 632, 842
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 151
AcvI CACGTG 1 cut(s) 1040
AfaI GTAC 1 cut(s) 889
AfiI CCNNNNNNNGG 1 cut(s) 104
AflII CTTAAG 1 cut(s) 421
AflIII ACRYGT 2 cut(s) 954, 1039
AgsI TTSAA 6 cut(s) 346, 525, 932, 1009, 1046, 1159
AhdI GACNNNNNGTC 1 cut(s) 224
AhlI ACTAGT 1 cut(s) 925
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 6 cut(s) 314, 633, 718, 739, 985, 1153
AluI AGCT 6 cut(s) 314, 633, 718, 739, 985, 1153
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 5 cut(s) 191, 207, 211, 427, 1135
AlwI GGATC 3 cut(s) 345, 632, 842
Ama87I CYCGRG 1 cut(s) 905
Aor13HI TCCGGA 1 cut(s) 946
AoxI GGCC 4 cut(s) 465, 674, 744, 1213
ApeKI GCWGC 1 cut(s) 542
ApoI RAATTY 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 293
Asp718I GGTACC 1 cut(s) 887
AspLEI GCGC 2 cut(s) 7, 1054
AspS9I GGNCC 2 cut(s) 465, 744
AsuC2I CCSGG 1 cut(s) 1229
AsuHPI GGTGA 3 cut(s) 50, 87, 820
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 905
AxyI CCTNAGG 1 cut(s) 678
BanI GGYRCC 1 cut(s) 887
BanII GRGCYC 1 cut(s) 720
BbrPI CACGTG 1 cut(s) 1040
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 1 cut(s) 554
BccI CCATC 2 cut(s) 55, 951
BcgI CGANNNNNNTGC 4 cut(s) 313, 347, 763, 797
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 1 cut(s) 1229
BcoDI GTCTC 5 cut(s) 191, 207, 211, 427, 1135
BcuI ACTAGT 1 cut(s) 925
BfaI CTAG 1 cut(s) 926
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 421
BisI GCNGC 2 cut(s) 320, 543
BlsI GCNGC 2 cut(s) 321, 544
Bme1390I CCNGG 2 cut(s) 269, 1229
BmeRI GACNNNNNGTC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 905
BmgT120I GGNCC 2 cut(s) 465, 744
BmiI GGNNCC 1 cut(s) 889
BmrFI CCNGG 2 cut(s) 269, 1229
BmrI ACTGGG 2 cut(s) 659, 1189
BmsI GCATC 3 cut(s) 226, 793, 1084
BmuI ACTGGG 2 cut(s) 659, 1189
BpiI GAAGAC 1 cut(s) 503
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 84, 826
BpuMI CCSGG 1 cut(s) 1229
BsaAI YACGTR 1 cut(s) 1040
BsaBI GATNNNNATC 1 cut(s) 977
BsaI GGTCTC 1 cut(s) 427
BsaJI CCNNGG 4 cut(s) 323, 747, 831, 1083
BsaWI WCCGGW 2 cut(s) 260, 946
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 654, 1184
Bse21I CCTNAGG 1 cut(s) 678
Bse3DI GCAATG 1 cut(s) 1137
Bse8I GATNNNNATC 1 cut(s) 977
BseAI TCCGGA 1 cut(s) 946
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 4 cut(s) 323, 747, 831, 1083
BseGI GGATG 2 cut(s) 784, 943
BseJI GATNNNNATC 1 cut(s) 977
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 1137
BseMII CTCAG 8 cut(s) 212, 218, 260, 444, 669, 754, 804, 851
BseNI ACTGG 2 cut(s) 654, 1184
BseRI GAGGAG 8 cut(s) 64, 67, 70, 73, 76, 552, 617, 620
BseXI GCAGC 1 cut(s) 554
BsgI GTGCAG 2 cut(s) 1020, 1157
Bsh1236I CGCG 1 cut(s) 1114
BshFI GGCC 4 cut(s) 467, 676, 746, 1215
BshNI GGYRCC 1 cut(s) 887
BsiHKAI GWGCWC 1 cut(s) 720
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 3 cut(s) 261, 947, 1229
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 5 cut(s) 191, 207, 211, 427, 1135
BsmBI CGTCTC 1 cut(s) 1135
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 1108
BsnI GGCC 4 cut(s) 467, 676, 746, 1215
Bso31I GGTCTC 1 cut(s) 427
BsoBI CYCGRG 1 cut(s) 905
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 720
Bsp13I TCCGGA 1 cut(s) 946
Bsp143I GATC 5 cut(s) 337, 637, 847, 919, 1068
Bsp19I CCATGG 1 cut(s) 747
BspACI CCGC 4 cut(s) 317, 320, 965, 1114
BspANI GGCC 4 cut(s) 467, 676, 746, 1215
BspCNI CTCAG 8 cut(s) 211, 217, 259, 445, 670, 753, 805, 850
BspEI TCCGGA 1 cut(s) 946
BspFNI CGCG 1 cut(s) 1114
BspLI GGNNCC 1 cut(s) 889
BspPI GGATC 3 cut(s) 345, 632, 842
BspT104I TTCGAA 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 887
BspTI CTTAAG 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 1137
BsrI ACTGG 2 cut(s) 654, 1184
BssECI CCNNGG 4 cut(s) 323, 747, 831, 1083
BssMI GATC 5 cut(s) 337, 637, 847, 919, 1068
BssT1I CCWWGG 2 cut(s) 747, 831
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 222, 1203
Bst6I CTCTTC 4 cut(s) 163, 209, 747, 996
BstAFI CTTAAG 1 cut(s) 421
BstBAI YACGTR 1 cut(s) 1040
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 987
BstDSI CCRYGG 1 cut(s) 747
BstEII GGTNACC 1 cut(s) 263
BstF5I GGATG 2 cut(s) 784, 943
BstFNI CGCG 1 cut(s) 1114
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 1054
BstKTI GATC 5 cut(s) 340, 640, 850, 922, 1071
BstMAI GTCTC 5 cut(s) 191, 207, 211, 427, 1135
BstMBI GATC 5 cut(s) 337, 637, 847, 919, 1068
BstMWI GCNNNNNNNGC 1 cut(s) 736
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 958
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 267, 1227
BstUI CGCG 1 cut(s) 1114
BstV1I GCAGC 1 cut(s) 554
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 2 cut(s) 337, 847
BstYI RGATCY 2 cut(s) 337, 847
Bsu36I CCTNAGG 1 cut(s) 678
BsuRI GGCC 4 cut(s) 467, 676, 746, 1215
BtgI CCRYGG 1 cut(s) 747
BtsCI GGATG 2 cut(s) 784, 943
BtsIMutI CAGTG 4 cut(s) 175, 450, 570, 1199
Cac8I GCNNGC 1 cut(s) 987
CfoI GCGC 2 cut(s) 7, 1054
Cfr13I GGNCC 2 cut(s) 465, 744
Csp6I GTAC 1 cut(s) 888
CviAII CATG 2 cut(s) 748, 955
CviQI GTAC 1 cut(s) 888
DpnI GATC 5 cut(s) 339, 639, 849, 921, 1070
DpnII GATC 5 cut(s) 337, 637, 847, 919, 1068
DriI GACNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 4 cut(s) 163, 209, 747, 996
Eam1105I GACNNNNNGTC 1 cut(s) 224
EarI CTCTTC 4 cut(s) 163, 209, 747, 996
EciI GGCGGA 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 718
Eco130I CCWWGG 2 cut(s) 747, 831
Eco147I AGGCCT 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 720
Eco31I GGTCTC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 151
Eco72I CACGTG 1 cut(s) 1040
Eco81I CCTNAGG 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 905
Eco91I GGTNACC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 718
EcoO65I GGTNACC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 267
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 747, 831
EcoT38I GRGCYC 1 cut(s) 720
ErhI CCWWGG 2 cut(s) 747, 831
Esp3I CGTCTC 1 cut(s) 1135
FaeI CATG 2 cut(s) 751, 958
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 388
FatI CATG 2 cut(s) 747, 954
Fnu4HI GCNGC 2 cut(s) 320, 543
FokI GGATG 2 cut(s) 771, 930
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 2 cut(s) 320, 543
FspBI CTAG 1 cut(s) 926
GlaI GCGC 2 cut(s) 6, 1053
GluI GCNGC 2 cut(s) 320, 543
GsuI CTGGAG 1 cut(s) 390
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 467, 676, 746, 1215
HapII CCGG 3 cut(s) 261, 947, 1229
HhaI GCGC 2 cut(s) 7, 1054
Hin1II CATG 2 cut(s) 751, 958
Hin6I GCGC 2 cut(s) 5, 1052
HinP1I GCGC 2 cut(s) 5, 1052
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HpaII CCGG 3 cut(s) 261, 947, 1229
HphI GGTGA 3 cut(s) 50, 87, 820
Hpy166II GTNNAC 2 cut(s) 799, 828
Hpy188III TCNNGA 9 cut(s) 101, 206, 277, 369, 628, 766, 947, 1009, 1220
Hpy8I GTNNAC 2 cut(s) 799, 828
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 6 cut(s) 383, 542, 568, 689, 802, 1226
HpyCH4III ACNGT 2 cut(s) 222, 1203
HpyCH4IV ACGT 1 cut(s) 1039
HpyCH4V TGCA 5 cut(s) 334, 784, 989, 1037, 1138
HpyF10VI GCNNNNNNNGC 1 cut(s) 736
HpySE526I ACGT 1 cut(s) 1039
Hsp92II CATG 2 cut(s) 751, 958
HspAI GCGC 2 cut(s) 5, 1052
Kpn2I TCCGGA 1 cut(s) 946
KpnI GGTACC 1 cut(s) 891
Kzo9I GATC 5 cut(s) 337, 637, 847, 919, 1068
LmnI GCTCC 3 cut(s) 319, 539, 715
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 3 cut(s) 226, 793, 1084
MaeI CTAG 1 cut(s) 926
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 4 cut(s) 33, 263, 595, 1220
MalI GATC 5 cut(s) 339, 639, 849, 921, 1070
MboI GATC 5 cut(s) 337, 637, 847, 919, 1068
MflI RGATCY 2 cut(s) 337, 847
MhlI GDGCHC 1 cut(s) 720
MluCI AATT 3 cut(s) 250, 469, 761
MlyI GAGTC 2 cut(s) 190, 370
MmeI TCCRAC 1 cut(s) 123
MroI TCCGGA 1 cut(s) 946
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 4 cut(s) 401, 422, 735, 881
MspCI CTTAAG 1 cut(s) 421
MspI CCGG 3 cut(s) 261, 947, 1229
MspR9I CCNGG 2 cut(s) 269, 1229
Mva1269I GAATGC 1 cut(s) 1108
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 1114
MwoI GCNNNNNNNGC 1 cut(s) 736
NciI CCSGG 1 cut(s) 1229
NcoI CCATGG 1 cut(s) 747
NdeII GATC 5 cut(s) 337, 637, 847, 919, 1068
NlaIII CATG 2 cut(s) 751, 958
NlaIV GGNNCC 1 cut(s) 889
NmeAIII GCCGAG 2 cut(s) 348, 1191
NmuCI GTSAC 2 cut(s) 595, 1220
NspI RCATGY 1 cut(s) 958
NspV TTCGAA 1 cut(s) 41
PaeR7I CTCGAG 1 cut(s) 905
PceI AGGCCT 1 cut(s) 676
PciI ACATGT 1 cut(s) 954
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 1108
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 8 cut(s) 43, 113, 231, 283, 384, 481, 1019, 1184
PflFI GACNNNGTC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 321, 544
PleI GAGTC 2 cut(s) 190, 370
PmaCI CACGTG 1 cut(s) 1040
PmlI CACGTG 1 cut(s) 1040
PpsI GAGTC 2 cut(s) 190, 370
Ppu21I YACGTR 1 cut(s) 1040
PscI ACATGT 1 cut(s) 954
PsiI TTATAA 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 267
PspCI CACGTG 1 cut(s) 1040
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 889
PspPI GGNCC 2 cut(s) 465, 744
PspXI VCTCGAGB 1 cut(s) 905
PsuI RGATCY 2 cut(s) 337, 847
PsyI GACNNNGTC 1 cut(s) 199
RsaI GTAC 1 cut(s) 889
RsaNI GTAC 1 cut(s) 888
SacI GAGCTC 1 cut(s) 720
SaqAI TTAA 4 cut(s) 401, 422, 735, 881
SatI GCNGC 2 cut(s) 320, 543
Sau3AI GATC 5 cut(s) 337, 637, 847, 919, 1068
Sau96I GGNCC 2 cut(s) 465, 744
SchI GAGTC 2 cut(s) 190, 370
ScrFI CCNGG 2 cut(s) 269, 1229
SduI GDGCHC 1 cut(s) 720
SfaNI GCATC 3 cut(s) 226, 793, 1084
Sfr274I CTCGAG 1 cut(s) 905
SfuI TTCGAA 1 cut(s) 41
SlaI CTCGAG 1 cut(s) 905
SmlI CTYRAG 4 cut(s) 99, 421, 805, 905
SmoI CTYRAG 4 cut(s) 99, 421, 805, 905
SpeI ACTAGT 1 cut(s) 925
Sse9I AATT 3 cut(s) 250, 469, 761
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 4 cut(s) 317, 320, 965, 1114
SspI AATATT 1 cut(s) 868
SspMI CTAG 1 cut(s) 926
SstI GAGCTC 1 cut(s) 720
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 2 cut(s) 267, 1227
StyI CCWWGG 2 cut(s) 747, 831
TaaI ACNGT 2 cut(s) 222, 1203
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 5 cut(s) 41, 234, 387, 906, 981
TasI AATT 3 cut(s) 250, 469, 761
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 8 cut(s) 43, 113, 231, 283, 384, 481, 1019, 1184
Tru1I TTAA 4 cut(s) 401, 422, 735, 881
Tru9I TTAA 4 cut(s) 401, 422, 735, 881
TscAI CASTG 4 cut(s) 175, 457, 570, 1206
TseFI GTSAC 2 cut(s) 595, 1220
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 2 cut(s) 595, 1220
TspDTI ATGAA 5 cut(s) 135, 509, 626, 809, 989
TspGWI ACGGA 3 cut(s) 509, 1159, 1190
TspRI CASTG 4 cut(s) 175, 457, 570, 1206
Tth111I GACNNNGTC 1 cut(s) 199
Vha464I CTTAAG 1 cut(s) 421
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 958
XhoI CTCGAG 1 cut(s) 905
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.