Rw1G003050

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001441
Physical Location & Seq
Forward (+)
5560524 .. 5565744
5221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003050.1

Sequence Viewer

Length: 750 bp
ATGCCCAATGCCAATGAGCAGAATGAGAGGAGGAAGGGTGAGGGTTTGTCGTTGTTGAGGTTTCCGAAAAGTTTGGATATGAATCCCACCCAGGATGCGGGTGTTAGCAAGGGAGCACTTCCGAGTTTGTTTTATAAGGACAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTAAGCAAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTGTATGAGGACTTCAGGCACAGCTTGGAGATCATCAAGATATCTCAAGAAGAGGAGAAGCATAGGAAAACTTCGAGGCAGAGGCTTCGTATCATAGATATAGGTCAAACTCCTGAGTATATGATGAAGCCCCCGAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGATAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAGATTATGGTTCTGCACGAGTTCAAGACGATAGACATGGTAAACATCACACAACAGATTTCCACCGTTGTGTGATGCAGGTCAGTCATAGCGTTTCCGGAAACGCTATAATACATCTTATATTGATAGCGTTTTTGAAACGCTATTGCTTGACCTTTAGTAGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

249

Amino Acids

28.73

Weight (kDa)

8.35

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
Acc36I ACCTGC 1 cut(s) 649
AccIII TCCGGA 1 cut(s) 677
AciI CCGC 2 cut(s) 98, 153
AcsI RAATTY 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 337
AfiI CCNNNNNNNGG 4 cut(s) 97, 248, 249, 479
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 3 cut(s) 178, 605, 718
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AleI CACNNNNGTG 1 cut(s) 648
AluBI AGCT 6 cut(s) 165, 204, 226, 363, 532, 544
AluI AGCT 6 cut(s) 165, 204, 226, 363, 532, 544
Alw21I GWGCWC 2 cut(s) 118, 167
Alw26I GTCTC 2 cut(s) 150, 330
Ama87I CYCGRG 2 cut(s) 242, 327
Aor13HI TCCGGA 1 cut(s) 677
AoxI GGCC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 563
Asp700I GAANNNNTTC 1 cut(s) 497
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 2 cut(s) 242, 327
BanII GRGCYC 1 cut(s) 167
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BauI CACGAG 1 cut(s) 597
BbsI GAAGAC 2 cut(s) 185, 510
Bbv12I GWGCWC 2 cut(s) 118, 167
BccI CCATC 2 cut(s) 298, 510
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 150, 330
BfmI CTRYAG 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 649
BlpI GCTNAGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 92
BmeT110I CYCGRG 2 cut(s) 242, 327
BmgT120I GGNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 3 cut(s) 85, 160, 645
BpiI GAAGAC 2 cut(s) 185, 510
Bpu1102I GCTNAGC 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 90, 243
BsaWI WCCGGW 1 cut(s) 677
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 248, 249, 479
Bse8I GATNNNNATC 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 677
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 90, 243
BseGI GGATG 4 cut(s) 100, 175, 306, 502
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 97, 248, 249, 479
BseMII CTCAG 2 cut(s) 312, 444
BseRI GAGGAG 3 cut(s) 43, 260, 407
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 118, 167
BsiHKCI CYCGRG 2 cut(s) 242, 327
BsiSI CCGG 1 cut(s) 678
BslI CCNNNNNNNGG 4 cut(s) 97, 248, 249, 479
BsmAI GTCTC 2 cut(s) 150, 330
BsnI GGCC 1 cut(s) 241
BsoBI CYCGRG 2 cut(s) 242, 327
Bsp1286I GDGCHC 2 cut(s) 118, 167
Bsp13I TCCGGA 1 cut(s) 677
Bsp143I GATC 1 cut(s) 369
Bsp1720I GCTNAGC 1 cut(s) 227
BspACI CCGC 2 cut(s) 98, 153
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 2 cut(s) 313, 445
BspEI TCCGGA 1 cut(s) 677
BspMAI CTGCAG 1 cut(s) 526
BspMI ACCTGC 1 cut(s) 649
BssECI CCNNGG 2 cut(s) 90, 243
BssMI GATC 1 cut(s) 369
BssSI CACGAG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 647
Bst6I CTCTTC 2 cut(s) 303, 384
BstDEI CTNAG 3 cut(s) 227, 321, 453
BstF5I GGATG 4 cut(s) 100, 175, 306, 502
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 2 cut(s) 150, 330
BstMBI GATC 1 cut(s) 369
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 522
BstV2I GAAGAC 2 cut(s) 185, 510
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 4 cut(s) 100, 175, 306, 502
BveI ACCTGC 1 cut(s) 649
Cfr13I GGNCC 1 cut(s) 240
CviAII CATG 2 cut(s) 514, 617
DdeI CTNAG 3 cut(s) 227, 321, 453
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
DraI TTTAAA 1 cut(s) 568
Eam1104I CTCTTC 2 cut(s) 303, 384
EarI CTCTTC 2 cut(s) 303, 384
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 337
Eco88I CYCGRG 2 cut(s) 242, 327
EcoICRI GAGCTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 381
EcoT22I ATGCAT 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 167
FaeI CATG 2 cut(s) 517, 620
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 2 cut(s) 513, 616
FauI CCCGC 1 cut(s) 91
FokI GGATG 4 cut(s) 107, 182, 313, 489
FriOI GRGCYC 1 cut(s) 167
HaeIII GGCC 1 cut(s) 241
HapII CCGG 1 cut(s) 678
Hin1II CATG 2 cut(s) 517, 620
HinfI GANTC 4 cut(s) 82, 317, 323, 578
HpaII CCGG 1 cut(s) 678
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 261, 623
Hpy188I TCNGA 6 cut(s) 66, 123, 169, 322, 577, 583
Hpy188III TCNNGA 6 cut(s) 376, 386, 452, 506, 605, 678
Hpy8I GTNNAC 2 cut(s) 261, 623
HpyAV CCTTC 4 cut(s) 28, 247, 469, 473
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4V TGCA 4 cut(s) 173, 524, 596, 658
HpyF3I CTNAG 3 cut(s) 227, 321, 453
Hsp92II CATG 2 cut(s) 517, 620
Kpn2I TCCGGA 1 cut(s) 677
Kzo9I GATC 1 cut(s) 369
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 7 cut(s) 77, 104, 340, 465, 519, 644, 691
LweI GCATC 3 cut(s) 85, 160, 645
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 5 cut(s) 190, 205, 320, 401, 510
MhlI GDGCHC 2 cut(s) 118, 167
MluCI AATT 2 cut(s) 537, 563
MlyI GAGTC 3 cut(s) 326, 332, 587
Mph1103I ATGCAT 1 cut(s) 175
MroI TCCGGA 1 cut(s) 677
MroXI GAANNNNTTC 1 cut(s) 497
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 648
MspI CCGG 1 cut(s) 678
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
NdeII GATC 1 cut(s) 369
NlaIII CATG 2 cut(s) 517, 620
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 1 cut(s) 517
OliI CACNNNNGTG 1 cut(s) 648
PciI ACATGT 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 497
PfeI GAWTC 1 cut(s) 82
PleI GAGTC 3 cut(s) 325, 331, 586
PpsI GAGTC 3 cut(s) 325, 331, 586
PscI ACATGT 1 cut(s) 513
PsiI TTATAA 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspPI GGNCC 1 cut(s) 240
PstI CTGCAG 1 cut(s) 526
RseI CAYNNNNRTG 1 cut(s) 648
SacI GAGCTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 567
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 3 cut(s) 326, 332, 587
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 2 cut(s) 118, 167
SfaNI GCATC 3 cut(s) 85, 160, 645
SfcI CTRYAG 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
Sse9I AATT 2 cut(s) 537, 563
SsiI CCGC 2 cut(s) 98, 153
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 647
TaqI TCGA 1 cut(s) 413
TaqII GACCGA 1 cut(s) 197
TasI AATT 2 cut(s) 537, 563
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TspDTI ATGAA 3 cut(s) 95, 479, 576
XapI RAATTY 1 cut(s) 563
XceI RCATGY 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 497
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.