Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Forward (+)

2689652 .. 2692985

Gene Structure 3334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGTTTGTTGAGGTTTCCGAAAAGTTTGGATATGAATCCCACCCAGGATGCGGGTGTTAGCAAGGGAGCACTTCCGAGTTTGTTTTATAAGGACAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGCAAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTGTATGAGGACTTCAGGCACAGCTTGGAGATCATCAAGATATCTCAAGAAGAGGAGAAGCATAGGAAAACTTCGAGGCAGAGGCTTCGTATCATAGATATAGGTCAAACTCCTGAGTATATGATGAAGCCCCCGAAGGAAGGCTTGGTTGAGAAGGCAATTTGGTGCCTAATATGTGTTAAATACTATGTTGAATGCAGTATTTCCATCCAGATAACATGCATGTCTTCTCCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAAATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAACATCTGTCTTCAATTTTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGAAAGAAGCTATTAAAGTATCTTCGAAGAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCAAACTTGGTCTTCGGGACACGCCAGATGTCAAACAAGAGTACAGGAAACATTACAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

276

Amino Acids

32.09

Weight (kDa)

9.41

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S15	PF00312	186 - 261	8e-23	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	459
AciI	CCGC	2 cut(s)	53, 108
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	292
AfaI	GTAC	1 cut(s)	809
AfiI	CCNNNNNNNGG	4 cut(s)	52, 203, 204, 434
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	5 cut(s)	133, 488, 608, 648, 689
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	7 cut(s)	120, 159, 181, 318, 535, 547, 715
AluI	AGCT	7 cut(s)	120, 159, 181, 318, 535, 547, 715
Alw21I	GWGCWC	2 cut(s)	73, 122
Alw26I	GTCTC	2 cut(s)	105, 285
Ama87I	CYCGRG	2 cut(s)	197, 282
AoxI	GGCC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	566
AspS9I	GGNCC	1 cut(s)	195
AsuII	TTCGAA	1 cut(s)	730
AvaI	CYCGRG	2 cut(s)	197, 282
BanI	GGYRCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
BauI	CACGAG	1 cut(s)	600
BbsI	GAAGAC	5 cut(s)	140, 513, 636, 677, 770
Bbv12I	GWGCWC	2 cut(s)	73, 122
BccI	CCATC	2 cut(s)	253, 509
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	105, 285
BfrI	CTTAAG	1 cut(s)	677
BlpI	GCTNAGC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	47
BmeT110I	CYCGRG	2 cut(s)	197, 282
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	751
BmsI	GCATC	2 cut(s)	40, 115
BmuI	ACTGGG	1 cut(s)	751
BpiI	GAAGAC	5 cut(s)	140, 513, 636, 677, 770
BpmI	CTGGAG	1 cut(s)	510
Bpu1102I	GCTNAGC	1 cut(s)	182
Bpu14I	TTCGAA	1 cut(s)	730
BpuEI	CTTGAG	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	45, 198
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 203, 204, 434
Bse1I	ACTGG	1 cut(s)	746
Bse3DI	GCAATG	1 cut(s)	699
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	45, 198
BseGI	GGATG	4 cut(s)	55, 130, 261, 501
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	4 cut(s)	52, 203, 204, 434
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	3 cut(s)	173, 267, 399
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	3 cut(s)	215, 362, 718
BsgI	GTGCAG	2 cut(s)	582, 719
BshFI	GGCC	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	459
BsiHKAI	GWGCWC	2 cut(s)	73, 122
BsiHKCI	CYCGRG	2 cut(s)	197, 282
BslFI	GGGAC	2 cut(s)	758, 797
BslI	CCNNNNNNNGG	4 cut(s)	52, 203, 204, 434
BsmAI	GTCTC	2 cut(s)	105, 285
BsmFI	GGGAC	2 cut(s)	758, 797
BsmI	GAATGC	2 cut(s)	494, 670
BsnI	GGCC	1 cut(s)	196
BsoBI	CYCGRG	2 cut(s)	197, 282
Bsp119I	TTCGAA	1 cut(s)	730
Bsp1286I	GDGCHC	2 cut(s)	73, 122
Bsp143I	GATC	2 cut(s)	324, 630
Bsp1720I	GCTNAGC	1 cut(s)	182
BspACI	CCGC	2 cut(s)	53, 108
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	3 cut(s)	174, 268, 400
BspLI	GGNNCC	1 cut(s)	461
BspT104I	TTCGAA	1 cut(s)	730
BspT107I	GGYRCC	1 cut(s)	459
BspTI	CTTAAG	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	45, 198
BssMI	GATC	2 cut(s)	324, 630
BssSI	CACGAG	1 cut(s)	600
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	47
Bst6I	CTCTTC	2 cut(s)	258, 339
BstAFI	CTTAAG	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	730
BstDEI	CTNAG	4 cut(s)	182, 276, 408, 627
BstF5I	GGATG	4 cut(s)	55, 130, 261, 501
BstKTI	GATC	2 cut(s)	327, 633
BstMAI	GTCTC	2 cut(s)	105, 285
BstMBI	GATC	2 cut(s)	324, 630
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	516, 520
BstSCI	CCNGG	1 cut(s)	45
BstV2I	GAAGAC	5 cut(s)	140, 513, 636, 677, 770
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	55, 130, 261, 501
Cfr13I	GGNCC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	808
CviAII	CATG	2 cut(s)	513, 517
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	4 cut(s)	182, 276, 408, 627
DpnI	GATC	2 cut(s)	326, 632
DpnII	GATC	2 cut(s)	324, 630
DraI	TTTAAA	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	258, 339
EarI	CTCTTC	2 cut(s)	258, 339
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	292
Eco88I	CYCGRG	2 cut(s)	197, 282
EcoICRI	GAGCTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	336
EcoT22I	ATGCAT	2 cut(s)	130, 518
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	2 cut(s)	516, 520
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	2 cut(s)	758, 797
FatI	CATG	2 cut(s)	512, 516
FauI	CCCGC	1 cut(s)	46
FokI	GGATG	4 cut(s)	62, 137, 268, 488
FriOI	GRGCYC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	516, 520
HinfI	GANTC	5 cut(s)	37, 272, 278, 581, 746
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	5 cut(s)	21, 78, 124, 277, 580
Hpy188III	TCNNGA	6 cut(s)	331, 341, 407, 505, 527, 782
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	4 cut(s)	202, 424, 428, 442
HpyCH4V	TGCA	5 cut(s)	128, 492, 516, 599, 700
HpyF3I	CTNAG	4 cut(s)	182, 276, 408, 627
Hsp92II	CATG	2 cut(s)	516, 520
Kzo9I	GATC	2 cut(s)	324, 630
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	9 cut(s)	32, 59, 295, 420, 518, 540, 727, 796, 804
LweI	GCATC	2 cut(s)	40, 115
MalI	GATC	2 cut(s)	326, 632
MboI	GATC	2 cut(s)	324, 630
MhlI	GDGCHC	2 cut(s)	73, 122
MluCI	AATT	6 cut(s)	453, 540, 566, 586, 648, 826
MlyI	GAGTC	4 cut(s)	281, 287, 590, 740
Mph1103I	ATGCAT	2 cut(s)	130, 518
MseI	TTAA	5 cut(s)	474, 570, 678, 719, 829
MspCI	CTTAAG	1 cut(s)	677
MspR9I	CCNGG	1 cut(s)	47
Mva1269I	GAATGC	2 cut(s)	494, 670
MvaI	CCWGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	324, 630
NlaIII	CATG	2 cut(s)	516, 520
NlaIV	GGNNCC	1 cut(s)	461
NsiI	ATGCAT	2 cut(s)	130, 518
NspI	RCATGY	2 cut(s)	516, 520
NspV	TTCGAA	1 cut(s)	730
PctI	GAATGC	2 cut(s)	494, 670
PfeI	GAWTC	1 cut(s)	37
PleI	GAGTC	4 cut(s)	280, 286, 589, 740
PpsI	GAGTC	4 cut(s)	280, 286, 589, 740
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	461
PspPI	GGNCC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	5 cut(s)	474, 570, 678, 719, 829
Sau3AI	GATC	2 cut(s)	324, 630
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	4 cut(s)	281, 287, 590, 740
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	73, 122
SfaNI	GCATC	2 cut(s)	40, 115
SfuI	TTCGAA	1 cut(s)	730
SmlI	CTYRAG	2 cut(s)	339, 677
SmoI	CTYRAG	2 cut(s)	339, 677
Sse9I	AATT	6 cut(s)	453, 540, 566, 586, 648, 826
SsiI	CCGC	2 cut(s)	53, 108
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	45
TaqI	TCGA	2 cut(s)	368, 730
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	6 cut(s)	453, 540, 566, 586, 648, 826
TatI	WGTACW	1 cut(s)	807
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	5 cut(s)	474, 570, 678, 719, 829
Tru9I	TTAA	5 cut(s)	474, 570, 678, 719, 829
TspDTI	ATGAA	3 cut(s)	50, 434, 579
Vha464I	CTTAAG	1 cut(s)	677
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	2 cut(s)	516, 520
Zsp2I	ATGCAT	2 cut(s)	130, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.