Rh7CG395600

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001441
Physical Location & Seq
Reverse (-)
50410562 .. 50419798
9237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG395600.1

Sequence Viewer

Length: 564 bp
ATGCCTGTCGCTGCGGTCATCGATACCGCCTTGAAATCCTATGCTCCTAAAGGTCGCCTTCCGATTCTCGGCTCTGATCGCAATGAGTTCATGCTCTACTGCCTCACTGCAGGACCTGATGGATGCGGGTGTTACCGTGTTAGCAAGGGAGCACTTCCGAGTTTGTTTTATAAGGACAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGCAAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTGTATGAGGACTTCAGGCACAGCTTGGAGATCATCAAGATATCTCAAGAAGAGGAGAAGCATAGGAAAACTTCGAGGCAGGTGGTGAAAATTGAAATCGATTCGTGGGTGGTTGTGTATTATGTATTTTTGTTTTCTTTCATTATGATTTTTCTGGGGTTCTTAAGAAGTGTCGATTCTGGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

187

Amino Acids

21.35

Weight (kDa)

6.76

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AarI CACCTGC 1 cut(s) 445
Acc36I ACCTGC 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 557
AciI CCGC 4 cut(s) 14, 27, 126, 189
AcuI CTGAAG 1 cut(s) 373
AfiI CCNNNNNNNGG 3 cut(s) 68, 284, 285
AflII CTTAAG 1 cut(s) 538
AgsI TTSAA 3 cut(s) 34, 214, 470
AluBI AGCT 4 cut(s) 201, 240, 262, 399
AluI AGCT 4 cut(s) 201, 240, 262, 399
Alw21I GWGCWC 2 cut(s) 154, 203
Alw26I GTCTC 2 cut(s) 186, 366
AlwNI CAGNNNCTG 1 cut(s) 116
Ama87I CYCGRG 2 cut(s) 278, 363
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 113, 276
AsuHPI GGTGA 1 cut(s) 472
AvaI CYCGRG 2 cut(s) 278, 363
AvaII GGWCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 2 cut(s) 154, 203
BccI CCATC 2 cut(s) 113, 334
BcoDI GTCTC 2 cut(s) 186, 366
BfmI CTRYAG 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 538
BfuAI ACCTGC 1 cut(s) 445
BisI GCNGC 1 cut(s) 12
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 2 cut(s) 278, 363
BmgT120I GGNCC 2 cut(s) 113, 276
BmiI GGNNCC 1 cut(s) 559
BmsI GCATC 2 cut(s) 113, 196
BpiI GAAGAC 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 405
Bsa29I ATCGAT 2 cut(s) 21, 474
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 284, 285
Bse3DI GCAATG 1 cut(s) 88
BseCI ATCGAT 2 cut(s) 21, 474
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 3 cut(s) 128, 211, 342
BseLI CCNNNNNNNGG 3 cut(s) 68, 284, 285
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 254, 348
BseRI GAGGAG 2 cut(s) 296, 443
BshFI GGCC 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 557
BshVI ATCGAT 2 cut(s) 21, 474
BsiHKAI GWGCWC 2 cut(s) 154, 203
BsiHKCI CYCGRG 2 cut(s) 278, 363
BslI CCNNNNNNNGG 3 cut(s) 68, 284, 285
BsmAI GTCTC 2 cut(s) 186, 366
BsnI GGCC 1 cut(s) 277
BsoBI CYCGRG 2 cut(s) 278, 363
Bsp1286I GDGCHC 2 cut(s) 154, 203
Bsp143I GATC 2 cut(s) 76, 405
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 4 cut(s) 14, 27, 126, 189
BspANI GGCC 1 cut(s) 277
BspCNI CTCAG 2 cut(s) 255, 349
BspDI ATCGAT 2 cut(s) 21, 474
BspLI GGNNCC 1 cut(s) 559
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 445
BspT107I GGYRCC 1 cut(s) 557
BspTI CTTAAG 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 76, 405
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 2 cut(s) 339, 420
BstAFI CTTAAG 1 cut(s) 538
BstDEI CTNAG 2 cut(s) 263, 357
BstF5I GGATG 3 cut(s) 128, 211, 342
BstKTI GATC 2 cut(s) 79, 408
BstMAI GTCTC 2 cut(s) 186, 366
BstMBI GATC 2 cut(s) 76, 405
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 108
BstV2I GAAGAC 1 cut(s) 221
Bsu15I ATCGAT 2 cut(s) 21, 474
BsuRI GGCC 1 cut(s) 277
BsuTUI ATCGAT 2 cut(s) 21, 474
BtsCI GGATG 3 cut(s) 128, 211, 342
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 445
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 113, 276
ClaI ATCGAT 2 cut(s) 21, 474
CviAII CATG 1 cut(s) 91
CviJI RGCY 6 cut(s) 72, 201, 240, 262, 277, 399
CviKI_1 RGCY 6 cut(s) 72, 201, 240, 262, 277, 399
DdeI CTNAG 2 cut(s) 263, 357
DpnI GATC 2 cut(s) 78, 407
DpnII GATC 2 cut(s) 76, 405
Eam1104I CTCTTC 2 cut(s) 339, 420
EarI CTCTTC 2 cut(s) 339, 420
Ecl136II GAGCTC 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 203
Eco32I GATATC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 373
Eco88I CYCGRG 2 cut(s) 278, 363
EcoICRI GAGCTC 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 113
EcoRV GATATC 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 203
FaeI CATG 1 cut(s) 94
FaiI YATR 9 cut(s) 42, 92, 171, 237, 243, 381, 438, 498, 521
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 1 cut(s) 90
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 3 cut(s) 135, 218, 349
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 277
Hin1II CATG 1 cut(s) 94
HinfI GANTC 5 cut(s) 64, 353, 359, 476, 551
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 5 cut(s) 63, 76, 159, 205, 358
Hpy188III TCNNGA 2 cut(s) 412, 422
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 2 cut(s) 68, 283
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 110, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 263, 357
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 2 cut(s) 76, 405
LmnI GCTCC 2 cut(s) 49, 149
LpnPI CCDG 7 cut(s) 18, 96, 129, 376, 440, 515, 540
LweI GCATC 2 cut(s) 113, 196
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 78, 407
MboI GATC 2 cut(s) 76, 405
MboII GAAGA 4 cut(s) 226, 241, 356, 437
MhlI GDGCHC 2 cut(s) 154, 203
MluCI AATT 1 cut(s) 465
MlyI GAGTC 2 cut(s) 362, 368
MnlI CCTC 9 cut(s) 113, 267, 274, 277, 312, 327, 376, 421, 444
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 1 cut(s) 539
MspCI CTTAAG 1 cut(s) 538
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 2 cut(s) 76, 405
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 559
NmeAIII GCCGAG 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 211
PaqCI CACCTGC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 64, 476, 551
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 2 cut(s) 361, 367
PpsI GAGTC 2 cut(s) 361, 367
PpuMI RGGWCCY 1 cut(s) 113
PsiI TTATAA 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 2 cut(s) 113, 276
PspPPI RGGWCCY 1 cut(s) 113
PstI CTGCAG 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 116
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 539
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 76, 405
Sau96I GGNCC 2 cut(s) 113, 276
SchI GAGTC 2 cut(s) 362, 368
SduI GDGCHC 2 cut(s) 154, 203
SetI ASST 9 cut(s) 55, 118, 203, 242, 264, 323, 401, 459, 563
SfaNI GCATC 2 cut(s) 113, 196
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 420, 538
SmoI CTYRAG 2 cut(s) 420, 538
Sse9I AATT 1 cut(s) 465
SsiI CCGC 4 cut(s) 14, 27, 126, 189
SstI GAGCTC 1 cut(s) 203
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 4 cut(s) 21, 449, 474, 549
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 465
TfiI GAWTC 3 cut(s) 64, 476, 551
Tru1I TTAA 1 cut(s) 539
Tru9I TTAA 1 cut(s) 539
TscAI CASTG 1 cut(s) 112
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 79, 505
TspRI CASTG 1 cut(s) 112
Vha464I CTTAAG 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.