Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Reverse (-)

5446975 .. 5451461

Gene Structure 4487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCTGAAGACTACACCTTTGCCAAAGCTCTTTAAGACTCTTCAGATCTCCGACTCCAGGCAGAGGCTTCGTATCATAGATATAGGTCAAACTCCTGAGTATATGATGAAGCCCCCGAAGGAAGGCTTGGTTGAGAAGATAACATGCATGTTAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAAATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAACATATGTCTTCAGTTTTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGAAAGAAGCTATTAAAGTATCTTCGAAGAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCAAACTTGGTCTCCGGGACACGCCAGATGTCAAACAAGAGTACAAGAAACATTACAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

147

Amino Acids

17.2

Weight (kDa)

9.98

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S15	PF00312	57 - 132	2.3e-23	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	3 cut(s)	26, 26, 243
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	57, 63, 122
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	221, 302
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	3 cut(s)	28, 160, 328
AluI	AGCT	3 cut(s)	28, 160, 328
Alw26I	GTCTC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	179
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	343
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	3 cut(s)	14, 249, 290
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	395
BfrI	CTTAAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	45
Bme1390I	CCNGG	2 cut(s)	58, 395
BmrFI	CCNGG	2 cut(s)	58, 395
BmrI	ACTGGG	1 cut(s)	364
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	3 cut(s)	14, 249, 290
BpmI	CTGGAG	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 63, 122
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	3 cut(s)	57, 63, 122
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	331
BsgI	GTGCAG	2 cut(s)	195, 332
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	371, 410
BslI	CCNNNNNNNGG	3 cut(s)	57, 63, 122
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	371, 410
BsmI	GAATGC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	395
Bsp119I	TTCGAA	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	45, 243
BspCNI	CTCAG	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	343
BspTI	CTTAAG	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	359
BssMI	GATC	2 cut(s)	45, 243
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	96, 240
BstKTI	GATC	2 cut(s)	48, 246
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	45, 243
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	2 cut(s)	147, 151
BstSCI	CCNGG	2 cut(s)	56, 393
BstV2I	GAAGAC	3 cut(s)	14, 249, 290
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	144, 148
CviJI	RGCY	6 cut(s)	28, 67, 112, 126, 160, 328
CviKI_1	RGCY	6 cut(s)	28, 67, 112, 126, 160, 328
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	96, 240
DpnI	GATC	2 cut(s)	47, 245
DpnII	GATC	2 cut(s)	45, 243
DraI	TTTAAA	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	395
Eco57I	CTGAAG	3 cut(s)	26, 26, 243
EcoRII	CCWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	149
FaeI	CATG	2 cut(s)	147, 151
FaiI	YATR	8 cut(s)	77, 83, 102, 104, 145, 149, 252, 254
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	2 cut(s)	371, 410
FatI	CATG	2 cut(s)	143, 147
FauNDI	CATATG	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	40
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	2 cut(s)	147, 151
HinfI	GANTC	4 cut(s)	37, 53, 194, 359
HpaII	CCGG	1 cut(s)	394
Hpy188I	TCNGA	3 cut(s)	45, 52, 193
Hpy188III	TCNNGA	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	112, 116
HpyCH4V	TGCA	3 cut(s)	147, 212, 313
HpyF3I	CTNAG	2 cut(s)	96, 240
Hsp92II	CATG	2 cut(s)	147, 151
Kzo9I	GATC	2 cut(s)	45, 243
LpnPI	CCDG	6 cut(s)	43, 70, 108, 340, 407, 417
MalI	GATC	2 cut(s)	47, 245
MboI	GATC	2 cut(s)	45, 243
MboII	GAAGA	7 cut(s)	19, 32, 148, 249, 290, 332, 357
MflI	RGATCY	1 cut(s)	45
MluCI	AATT	4 cut(s)	153, 179, 199, 439
MlyI	GAGTC	4 cut(s)	31, 47, 203, 353
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	57, 309
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	6 cut(s)	33, 152, 183, 291, 332, 442
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	2 cut(s)	58, 395
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	58
NciI	CCSGG	1 cut(s)	395
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	2 cut(s)	45, 243
NlaIII	CATG	2 cut(s)	147, 151
NsiI	ATGCAT	1 cut(s)	149
NspI	RCATGY	2 cut(s)	147, 151
NspV	TTCGAA	1 cut(s)	343
PctI	GAATGC	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	393
PleI	GAGTC	4 cut(s)	31, 47, 202, 353
PpsI	GAGTC	4 cut(s)	31, 47, 202, 353
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	45
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SaqAI	TTAA	6 cut(s)	33, 152, 183, 291, 332, 442
Sau3AI	GATC	2 cut(s)	45, 243
SchI	GAGTC	4 cut(s)	31, 47, 203, 353
ScrFI	CCNGG	2 cut(s)	58, 395
SetI	ASST	5 cut(s)	19, 30, 88, 162, 330
SfuI	TTCGAA	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	153, 179, 199, 439
StyD4I	CCNGG	2 cut(s)	56, 393
TaqI	TCGA	1 cut(s)	343
TasI	AATT	4 cut(s)	153, 179, 199, 439
TatI	WGTACW	1 cut(s)	420
Tru1I	TTAA	6 cut(s)	33, 152, 183, 291, 332, 442
Tru9I	TTAA	6 cut(s)	33, 152, 183, 291, 332, 442
TspDTI	ATGAA	2 cut(s)	122, 192
Vha464I	CTTAAG	1 cut(s)	290
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	2 cut(s)	147, 151
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.