Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Reverse (-)

42426627 .. 42427049

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG253200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCCCAATGCCGATGAGCAGAATGAGAGGAGGAAGGGTGAGGGTTTGCCGTTGTTGAGGTTTCCGAAAAGTTTGGATATGAATCCCACCCAGGATGAGGGTGTTAGCAAGGGAGCACTTCCGAGTTTGTTTTATAAGGACAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGCAAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTATATGAGGACTTCAGGCACAGCTTGGAGATCATCAAGATATCTCAAGAAGAGGAGATGCATAGGAAAAATTCGAGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

140

Amino Acids

16.17

Weight (kDa)

5.31

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AciI	CCGC	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	337
AfiI	CCNNNNNNNGG	3 cut(s)	97, 248, 249
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	165, 204, 226, 363
AluI	AGCT	4 cut(s)	165, 204, 226, 363
Alw21I	GWGCWC	2 cut(s)	118, 167
Alw26I	GTCTC	2 cut(s)	150, 330
Ama87I	CYCGRG	2 cut(s)	242, 327
AoxI	GGCC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	50
AvaI	CYCGRG	2 cut(s)	242, 327
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	118, 167
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	150, 330
BlpI	GCTNAGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	92
BmeT110I	CYCGRG	2 cut(s)	242, 327
BmgT120I	GGNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	160, 387
BpiI	GAAGAC	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	90, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 248, 249
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	90, 243
BseGI	GGATG	3 cut(s)	100, 175, 306
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	97, 248, 249
BseMII	CTCAG	2 cut(s)	218, 312
BseRI	GAGGAG	3 cut(s)	43, 260, 407
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	118, 167
BsiHKCI	CYCGRG	2 cut(s)	242, 327
BslI	CCNNNNNNNGG	3 cut(s)	97, 248, 249
BsmAI	GTCTC	2 cut(s)	150, 330
BsnI	GGCC	1 cut(s)	241
BsoBI	CYCGRG	2 cut(s)	242, 327
Bsp1286I	GDGCHC	2 cut(s)	118, 167
Bsp143I	GATC	1 cut(s)	369
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	219, 313
BssECI	CCNNGG	2 cut(s)	90, 243
BssMI	GATC	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	303, 384
BstDEI	CTNAG	2 cut(s)	227, 321
BstF5I	GGATG	3 cut(s)	100, 175, 306
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	2 cut(s)	150, 330
BstMBI	GATC	1 cut(s)	369
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	3 cut(s)	100, 175, 306
Cfr13I	GGNCC	1 cut(s)	240
CviJI	RGCY	5 cut(s)	165, 204, 226, 241, 363
CviKI_1	RGCY	5 cut(s)	165, 204, 226, 241, 363
DdeI	CTNAG	2 cut(s)	227, 321
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	303, 384
EarI	CTCTTC	2 cut(s)	303, 384
Ecl136II	GAGCTC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	337
Eco88I	CYCGRG	2 cut(s)	242, 327
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	381
EcoT22I	ATGCAT	2 cut(s)	175, 402
EcoT38I	GRGCYC	1 cut(s)	167
FaiI	YATR	7 cut(s)	80, 135, 201, 207, 343, 345, 402
FokI	GGATG	3 cut(s)	107, 182, 313
FriOI	GRGCYC	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	82, 317, 323
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	4 cut(s)	66, 123, 169, 322
Hpy188III	TCNNGA	2 cut(s)	376, 386
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	2 cut(s)	28, 247
HpyCH4V	TGCA	2 cut(s)	173, 400
HpyF3I	CTNAG	2 cut(s)	227, 321
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	3 cut(s)	77, 104, 340
LweI	GCATC	2 cut(s)	160, 387
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	4 cut(s)	190, 205, 320, 401
MhlI	GDGCHC	2 cut(s)	118, 167
MluCI	AATT	1 cut(s)	409
MlyI	GAGTC	2 cut(s)	326, 332
Mph1103I	ATGCAT	2 cut(s)	175, 402
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
NdeII	GATC	1 cut(s)	369
NsiI	ATGCAT	2 cut(s)	175, 402
PfeI	GAWTC	1 cut(s)	82
PleI	GAGTC	2 cut(s)	325, 331
PpsI	GAGTC	2 cut(s)	325, 331
PsiI	TTATAA	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	2 cut(s)	326, 332
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	118, 167
SetI	ASST	6 cut(s)	62, 167, 206, 228, 287, 365
SfaNI	GCATC	2 cut(s)	160, 387
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	1 cut(s)	409
SsiI	CCGC	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	90
TaqI	TCGA	1 cut(s)	413
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	1 cut(s)	409
TfiI	GAWTC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	95
XapI	RAATTY	1 cut(s)	409
Zsp2I	ATGCAT	2 cut(s)	175, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.