Rh2AG627400

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001441
Physical Location & Seq
Forward (+)
85232920 .. 85251305
18386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG627400.1

Sequence Viewer

Length: 1050 bp
ATGTGTCTGCAACGTGCTACCTCTGCACCCAGTGACAAATTCCATTTGTGGTTTCTGATACAAGTGGATTGTATCAATACTAAGTCTGAGGATGCATATGCCGTTGATGGATCTATGACAGATGTGGCACAACTCACAACTAAGATCAAGCATTTGCCTTCAGTTTCACACAAAAAGGATAAGCACGATAAGGGTCTTCAAGCAATGGTGCAGAGGCGGAAGGGATTATTGAAGTATCTTTGGCGGAGTGATTGGGTTTCTTACTGCCTTGTTCTCTCCAAACTTGGCCTTCGGGACACACCAGATTACAAACAAGAATACAAGAAACATTACAAGAACAAGCCCCCATCCTCATTATTGTTGTCTCTGTTTCTTGCCCGTTTAACATCTGTATTTAAGAATTACCAAGGGTGGAAGAAACCCTATCGACCAGTCGATAGGAGCGCTCGAACTCAAAAGAAGTTGAAGATCTGCCTTGACCGTGAATTCAAAATAGTTCTTCAAGCATGTCCGAAGGGAGGGATATATATAGGAGGCAATCGCAGAGCAGTTTTTGTCACTCACGATTTCTTAACAAGTATGGACATGCGCTGGTTACTTCTTAGTGTAGGTCTTCCATTAGAAGAACAGGCACCGATTCTTGAGGAAATAATAACTCAATTTGCTCGAGTGGCTGTCCCCGAGCTGTCTATTACTGTGGTAATACTGCACATCAGCGTTCGCTCATTAGGTAGTGTCGACTATCAGGATATCATTGATTTTGTTGCAAGAGAACCGATCAATGTTAATTTAGATGCTTCCCCTATTTATGACACTCCTTCTGCGCATGCTTCTACGGTTATTGAGCCGGAAGCTGAATTTGTTGATGGATCTGTGTTGGTTGTCAATGATAGGTTTTGGCAGCCGCATGCAGTTCATGTGAAATTGAACTGTGGCTCAGTCTGGTACAAGCCAAGCTGCAAGGTGGCTATGTGTGTCATCGCTGGTGCTCCTGATCGTGAGGTTCTTTTTGCTGAGTGTGAGATTGGAGTGGCCACTACATTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

349

Amino Acids

39.51

Weight (kDa)

8.91

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 40 - 98 2e-10 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 825
AccB1I GGYRCC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 738
AciI CCGC 3 cut(s) 217, 244, 905
AclWI GGATC 2 cut(s) 118, 877
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 3 cut(s) 38, 485, 857
AcuI CTGAAG 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 32
AfaI GTAC 1 cut(s) 947
AfeI AGCGCT 1 cut(s) 445
AfiI CCNNNNNNNGG 1 cut(s) 518
AgsI TTSAA 6 cut(s) 200, 232, 466, 490, 503, 928
AluBI AGCT 3 cut(s) 685, 854, 957
AluI AGCT 3 cut(s) 685, 854, 957
Alw21I GWGCWC 1 cut(s) 991
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 2 cut(s) 118, 877
Ama87I CYCGRG 2 cut(s) 666, 680
Aor51HI AGCGCT 1 cut(s) 445
AoxI GGCC 2 cut(s) 286, 1032
ApeKI GCWGC 2 cut(s) 901, 957
ApoI RAATTY 3 cut(s) 38, 485, 857
AspLEI GCGC 3 cut(s) 446, 591, 826
AvaI CYCGRG 2 cut(s) 666, 680
BalI TGGCCA 1 cut(s) 1034
BanI GGYRCC 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 188, 605
Bbv12I GWGCWC 1 cut(s) 991
BbvI GCAGC 2 cut(s) 913, 944
BccI CCATC 3 cut(s) 101, 355, 860
BceAI ACGGC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 369
BfoI RGCGCY 1 cut(s) 447
BglII AGATCT 1 cut(s) 468
BisI GCNGC 3 cut(s) 902, 905, 958
BlsI GCNGC 3 cut(s) 903, 906, 959
BmeT110I CYCGRG 2 cut(s) 666, 680
BmiI GGNNCC 1 cut(s) 633
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 82, 784
BmuI ACTGGG 1 cut(s) 24
BpiI GAAGAC 2 cut(s) 188, 605
BpuEI CTTGAG 1 cut(s) 662
BsaJI CCNNGG 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse1I ACTGG 2 cut(s) 30, 431
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 2 cut(s) 97, 347
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 3 cut(s) 78, 951, 1005
BseNI ACTGG 2 cut(s) 30, 431
BseXI GCAGC 2 cut(s) 913, 944
BsgI GTGCAG 3 cut(s) 9, 230, 692
BshFI GGCC 2 cut(s) 288, 1034
BshNI GGYRCC 1 cut(s) 631
BsiHKAI GWGCWC 1 cut(s) 991
BsiHKCI CYCGRG 2 cut(s) 666, 680
BsiSI CCGG 1 cut(s) 848
BslFI GGGAC 2 cut(s) 308, 662
BslI CCNNNNNNNGG 1 cut(s) 518
BsmAI GTCTC 1 cut(s) 369
BsmFI GGGAC 2 cut(s) 308, 662
BsnI GGCC 2 cut(s) 288, 1034
BsoBI CYCGRG 2 cut(s) 666, 680
Bsp1286I GDGCHC 1 cut(s) 991
Bsp143I GATC 6 cut(s) 110, 144, 468, 777, 869, 994
BspACI CCGC 3 cut(s) 217, 244, 905
BspANI GGCC 2 cut(s) 288, 1034
BspCNI CTCAG 3 cut(s) 79, 950, 1006
BspLI GGNNCC 1 cut(s) 633
BspPI GGATC 2 cut(s) 118, 877
BspT107I GGYRCC 1 cut(s) 631
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 2 cut(s) 30, 431
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 6 cut(s) 110, 144, 468, 777, 869, 994
BssT1I CCWWGG 1 cut(s) 406
Bst4CI ACNGT 4 cut(s) 482, 697, 838, 932
BstC8I GCNNGC 2 cut(s) 828, 909
BstDEI CTNAG 6 cut(s) 81, 87, 141, 602, 937, 1014
BstF5I GGATG 2 cut(s) 97, 347
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 3 cut(s) 446, 591, 826
BstKTI GATC 6 cut(s) 113, 147, 471, 780, 872, 997
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 6 cut(s) 110, 144, 468, 777, 869, 994
BstMWI GCNNNNNNNGC 2 cut(s) 23, 671
BstNSI RCATGY 4 cut(s) 510, 589, 830, 911
BstV1I GCAGC 2 cut(s) 913, 944
BstV2I GAAGAC 2 cut(s) 188, 605
BstX2I RGATCY 3 cut(s) 110, 468, 869
BstYI RGATCY 3 cut(s) 110, 468, 869
BsuRI GGCC 2 cut(s) 288, 1034
BtgZI GCGATG 1 cut(s) 964
BtsCI GGATG 2 cut(s) 97, 347
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 828, 909
CfoI GCGC 3 cut(s) 446, 591, 826
Csp6I GTAC 1 cut(s) 946
CviAII CATG 5 cut(s) 507, 586, 827, 908, 917
CviQI GTAC 1 cut(s) 946
DdeI CTNAG 6 cut(s) 81, 87, 141, 602, 937, 1014
DpnI GATC 6 cut(s) 112, 146, 470, 779, 871, 996
DpnII GATC 6 cut(s) 110, 144, 468, 777, 869, 994
DraIII CACNNNGTG 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 1032
EciI GGCGGA 2 cut(s) 232, 259
Eco130I CCWWGG 1 cut(s) 406
Eco32I GATATC 1 cut(s) 751
Eco47III AGCGCT 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 2 cut(s) 666, 680
EcoRI GAATTC 1 cut(s) 485
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 5 cut(s) 510, 589, 830, 911, 920
FaqI GGGAC 2 cut(s) 308, 662
FatI CATG 5 cut(s) 506, 585, 826, 907, 916
FauNDI CATATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 738
Fnu4HI GCNGC 3 cut(s) 902, 905, 958
FokI GGATG 2 cut(s) 104, 334
Fsp4HI GCNGC 3 cut(s) 902, 905, 958
FspI TGCGCA 1 cut(s) 825
GlaI GCGC 3 cut(s) 445, 590, 825
GluI GCNGC 3 cut(s) 902, 905, 958
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 2 cut(s) 288, 1034
HapII CCGG 1 cut(s) 848
HhaI GCGC 3 cut(s) 446, 591, 826
Hin1II CATG 5 cut(s) 510, 589, 830, 911, 920
Hin6I GCGC 3 cut(s) 444, 589, 824
HinP1I GCGC 3 cut(s) 444, 589, 824
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HinfI GANTC 1 cut(s) 637
HpaII CCGG 1 cut(s) 848
Hpy166II GTNNAC 1 cut(s) 739
Hpy188I TCNGA 3 cut(s) 57, 88, 513
Hpy188III TCNNGA 6 cut(s) 293, 563, 641, 746, 992, 998
Hpy8I GTNNAC 1 cut(s) 739
HpyAV CCTTC 5 cut(s) 168, 214, 299, 508, 828
HpyCH4III ACNGT 4 cut(s) 482, 697, 838, 932
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 8 cut(s) 10, 26, 95, 211, 709, 767, 911, 960
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 671
HpyF3I CTNAG 6 cut(s) 81, 87, 141, 602, 937, 1014
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 5 cut(s) 510, 589, 830, 911, 920
HspAI GCGC 3 cut(s) 444, 589, 824
Kzo9I GATC 6 cut(s) 110, 144, 468, 777, 869, 994
LmnI GCTCC 2 cut(s) 441, 994
Lsp1109I GCAGC 2 cut(s) 913, 944
LweI GCATC 2 cut(s) 82, 784
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 3 cut(s) 32, 556, 594
MalI GATC 6 cut(s) 112, 146, 470, 779, 871, 996
MboI GATC 6 cut(s) 110, 144, 468, 777, 869, 994
MboII GAAGA 6 cut(s) 188, 427, 478, 491, 605, 635
MflI RGATCY 3 cut(s) 110, 468, 869
MhlI GDGCHC 1 cut(s) 991
MlsI TGGCCA 1 cut(s) 1034
MluCI AATT 7 cut(s) 38, 400, 485, 659, 787, 857, 923
MluNI TGGCCA 1 cut(s) 1034
MnlI CCTC 8 cut(s) 31, 82, 207, 361, 512, 527, 637, 994
Mox20I TGGCCA 1 cut(s) 1034
Mph1103I ATGCAT 1 cut(s) 97
MscI TGGCCA 1 cut(s) 1034
MseI TTAA 4 cut(s) 383, 396, 572, 786
MslI CAYNNNNRTG 1 cut(s) 1045
Msp20I TGGCCA 1 cut(s) 1034
MspI CCGG 1 cut(s) 848
MwoI GCNNNNNNNGC 2 cut(s) 23, 671
NdeI CATATG 1 cut(s) 97
NdeII GATC 6 cut(s) 110, 144, 468, 777, 869, 994
NlaIII CATG 5 cut(s) 510, 589, 830, 911, 920
NlaIV GGNNCC 1 cut(s) 633
NmuCI GTSAC 2 cut(s) 32, 556
NsbI TGCGCA 1 cut(s) 825
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 4 cut(s) 510, 589, 830, 911
PaeI GCATGC 2 cut(s) 830, 911
PaeR7I CTCGAG 1 cut(s) 666
PfeI GAWTC 1 cut(s) 637
PkrI GCNGC 3 cut(s) 903, 906, 959
PspN4I GGNNCC 1 cut(s) 633
PspXI VCTCGAGB 1 cut(s) 666
PsuI RGATCY 3 cut(s) 110, 468, 869
RsaI GTAC 1 cut(s) 947
RsaNI GTAC 1 cut(s) 946
RseI CAYNNNNRTG 1 cut(s) 1045
SalI GTCGAC 1 cut(s) 737
SaqAI TTAA 4 cut(s) 383, 396, 572, 786
SatI GCNGC 3 cut(s) 902, 905, 958
Sau3AI GATC 6 cut(s) 110, 144, 468, 777, 869, 994
SduI GDGCHC 1 cut(s) 991
SfaNI GCATC 2 cut(s) 82, 784
Sfr274I CTCGAG 1 cut(s) 666
SlaI CTCGAG 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 1045
SmlI CTYRAG 2 cut(s) 641, 666
SmoI CTYRAG 2 cut(s) 641, 666
SphI GCATGC 2 cut(s) 830, 911
Sse9I AATT 7 cut(s) 38, 400, 485, 659, 787, 857, 923
SsiI CCGC 3 cut(s) 217, 244, 905
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 4 cut(s) 482, 697, 838, 932
TaiI ACGT 1 cut(s) 16
TaqI TCGA 5 cut(s) 427, 435, 448, 667, 738
TasI AATT 7 cut(s) 38, 400, 485, 659, 787, 857, 923
TauI GCSGC 1 cut(s) 907
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 4 cut(s) 383, 396, 572, 786
Tru9I TTAA 4 cut(s) 383, 396, 572, 786
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 2 cut(s) 32, 556
TseI GCWGC 2 cut(s) 901, 957
Tsp45I GTSAC 2 cut(s) 32, 556
TspDTI ATGAA 1 cut(s) 905
TspRI CASTG 1 cut(s) 37
XapI RAATTY 3 cut(s) 38, 485, 857
XceI RCATGY 4 cut(s) 510, 589, 830, 911
XhoI CTCGAG 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 738
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.