Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Reverse (-)

47027160 .. 47033031

Gene Structure 5872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATGGCTCTCCGACTGAGAACCAACCACCGAACCCTCACAAACCCATCTCTCATTCACCTCTTCTCGACTTCCTCCCCAGACCCATCCGACTCAACCGACCCAACTGAACCCAACCCCCAGTCCGACTCCTCCTCTCTCTCCAATTACTTCAGCGATGTCAAAGCCAGCCTCAGGCAACAGTCACAGTCGCAGCAACAACACAGCAGACCCACTTCATACTCACAGCAACAACACTTCAGACCCACTTCTCAGAACAACAACCCTTCTCTCTCCCGGCCTTCCAAGGCTGCCTCTTTGGAGGAAATCCGCAAAAACCTTGCGGAGTTTCGGCTTCGATCCATTGGGCCAAACCCCACTGAATCAAACTCTGCACCTCCACCTCCACCTCCACCTCCGAACCCCATTTCGTTTGAGAAGCTCTATAACAAAGGCGTGAGCAGCCGCAAGATGGAGTTTCAGACGGTTCGGGAGAGTCTGAAGCTCATAAGGCCTAATGCGAATGAGCAGAATGAGAGGAAGGGTACGGGATTGTCGTTGTTGAGGTTCAAAAGTTTGCATATGAATCCGAGCCAGGATGTGGGTGTTAGGAAGGGAGCACTTACAAGTTTGTTTGATAAGGAGAAGGAGAGAAGTGGAGAGAAGAGCTTGGATGCATTGAAGACTGAGTTTGTGAAGATGTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGGAAGTTGAGGCCCGAGGAAGGGAAGGAAGGGGGCGGGTTTACATTGGGGGAGTTCAGTGAGAGGTTGGTCAAGTTGAGGAAGATGGAAGAGAATGAGTCCGAGTCTTGGGTTGGGGGATTGAATACTGACTTGAAGCAGAGCTTGTTGAAGATATCCGCGGAGGAGAAGCATAGGAAAACTCCAATGCAGAGGCTTCATATGATAGATATAGGGCAAACTCCTGATTATATGATGAAACCCCCAAAGGAAGGCTTGGTTGAGAAGGCAAGTATAGTTCTTTTAACTTTTGCATTACCTGTGACTTTTCACAATATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

344

Amino Acids

38.84

Weight (kDa)

9.61

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccII	CGCG	1 cut(s)	872
AciI	CCGC	6 cut(s)	310, 323, 445, 747, 870, 872
AclWI	GGATC	1 cut(s)	333
AcuI	CTGAAG	3 cut(s)	136, 223, 500
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	7 cut(s)	174, 451, 580, 731, 732, 819, 962
AgsI	TTSAA	5 cut(s)	550, 661, 835, 847, 862
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	6 cut(s)	421, 484, 648, 687, 709, 855
AluI	AGCT	6 cut(s)	421, 484, 648, 687, 709, 855
Alw21I	GWGCWC	1 cut(s)	601
AlwI	GGATC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	4 cut(s)	278, 347, 491, 722
ApeKI	GCWGC	3 cut(s)	193, 290, 441
AspS9I	GGNCC	2 cut(s)	347, 723
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	725
AxyI	CCTNAGG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	601
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	3 cut(s)	205, 277, 453
BccI	CCATC	4 cut(s)	55, 94, 445, 790
BciT130I	CCWGG	1 cut(s)	575
BcnI	CCSGG	1 cut(s)	277
BisI	GCNGC	4 cut(s)	194, 291, 442, 445
BlsI	GCNGC	4 cut(s)	195, 292, 443, 446
Bme1390I	CCNGG	2 cut(s)	277, 575
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	2 cut(s)	347, 723
BmrFI	CCNGG	2 cut(s)	277, 575
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	643
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	668
Bpu10I	CCTNAGC	1 cut(s)	710
BpuMI	CCSGG	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	285, 726, 870
Bsc4I	CCNNNNNNNGG	7 cut(s)	174, 451, 580, 731, 732, 819, 962
Bse1I	ACTGG	1 cut(s)	121
Bse21I	CCTNAGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	285, 726, 870
BseGI	GGATG	3 cut(s)	86, 583, 658
BseLI	CCNNNNNNNGG	7 cut(s)	174, 451, 580, 731, 732, 819, 962
BseMII	CTCAG	5 cut(s)	8, 187, 266, 657, 701
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	3 cut(s)	121, 124, 890
BseXI	GCAGC	3 cut(s)	205, 277, 453
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	872
BshFI	GGCC	4 cut(s)	280, 349, 493, 724
BsiHKAI	GWGCWC	1 cut(s)	601
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	1 cut(s)	277
BslI	CCNNNNNNNGG	7 cut(s)	174, 451, 580, 731, 732, 819, 962
BsnI	GGCC	4 cut(s)	280, 349, 493, 724
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	1 cut(s)	338
BspACI	CCGC	6 cut(s)	310, 323, 445, 747, 870, 872
BspANI	GGCC	4 cut(s)	280, 349, 493, 724
BspCNI	CTCAG	5 cut(s)	9, 186, 265, 658, 702
BspFNI	CGCG	1 cut(s)	872
BspPI	GGATC	1 cut(s)	333
BspQI	GCTCTTC	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	285, 726, 870
BssMI	GATC	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	3 cut(s)	183, 189, 466
Bst6I	CTCTTC	3 cut(s)	68, 638, 795
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	5 cut(s)	17, 173, 252, 666, 710
BstDSI	CCRYGG	1 cut(s)	870
BstF5I	GGATG	3 cut(s)	86, 583, 658
BstFNI	CGCG	1 cut(s)	872
BstKTI	GATC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	2 cut(s)	441, 490
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	275, 573
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	3 cut(s)	205, 277, 453
BstV2I	GAAGAC	1 cut(s)	668
Bsu36I	CCTNAGG	1 cut(s)	173
BsuRI	GGCC	4 cut(s)	280, 349, 493, 724
BtgI	CCRYGG	1 cut(s)	870
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	86, 583, 658
BtsIMutI	CAGTG	2 cut(s)	357, 775
Cac8I	GCNNGC	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	347, 723
Cfr42I	CCGCGG	1 cut(s)	873
Csp6I	GTAC	1 cut(s)	525
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	5 cut(s)	17, 173, 252, 666, 710
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
Eam1104I	CTCTTC	3 cut(s)	68, 638, 795
EarI	CTCTTC	3 cut(s)	68, 638, 795
Eco130I	CCWWGG	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	867
Eco57I	CTGAAG	3 cut(s)	136, 223, 500
Eco81I	CCTNAGG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	867
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	285
FalI	AAGNNNNNCTT	4 cut(s)	839, 871, 950, 982
FauI	CCCGC	1 cut(s)	740
FauNDI	CATATG	2 cut(s)	561, 912
Fnu4HI	GCNGC	4 cut(s)	194, 291, 442, 445
FokI	GGATG	3 cut(s)	73, 590, 665
Fsp4HI	GCNGC	4 cut(s)	194, 291, 442, 445
GluI	GCNGC	4 cut(s)	194, 291, 442, 445
HaeIII	GGCC	4 cut(s)	280, 349, 493, 724
HapII	CCGG	1 cut(s)	277
HinfI	GANTC	7 cut(s)	92, 128, 362, 475, 565, 809, 815
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	753
Hpy188III	TCNNGA	3 cut(s)	67, 470, 935
Hpy8I	GTNNAC	1 cut(s)	753
HpyCH4III	ACNGT	3 cut(s)	183, 189, 466
HpyCH4V	TGCA	5 cut(s)	374, 559, 656, 901, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	441, 490
HpyF3I	CTNAG	5 cut(s)	17, 173, 252, 666, 710
KspI	CCGCGG	1 cut(s)	873
Kzo9I	GATC	1 cut(s)	338
LguI	GCTCTTC	1 cut(s)	638
LmnI	GCTCC	1 cut(s)	596
LpnPI	CCDG	9 cut(s)	93, 134, 160, 181, 290, 560, 587, 948, 1023
Lsp1109I	GCAGC	3 cut(s)	205, 277, 453
LweI	GCATC	1 cut(s)	643
MaeIII	GTNAC	2 cut(s)	183, 1012
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	7 cut(s)	55, 655, 673, 688, 805, 812, 874
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	5 cut(s)	86, 122, 484, 818, 824
MmeI	TCCRAC	3 cut(s)	37, 114, 150
Mph1103I	ATGCAT	1 cut(s)	658
MseI	TTAA	1 cut(s)	995
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	2 cut(s)	277, 575
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	872
MwoI	GCNNNNNNNGC	2 cut(s)	441, 490
NciI	CCSGG	1 cut(s)	277
NdeI	CATATG	2 cut(s)	561, 912
NdeII	GATC	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	183, 1012
NsiI	ATGCAT	1 cut(s)	658
PceI	AGGCCT	1 cut(s)	493
PciSI	GCTCTTC	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PfeI	GAWTC	2 cut(s)	362, 565
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	195, 292, 443, 446
PleI	GAGTC	5 cut(s)	86, 122, 483, 817, 823
PpsI	GAGTC	5 cut(s)	86, 122, 483, 817, 823
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspPI	GGNCC	2 cut(s)	347, 723
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
SacII	CCGCGG	1 cut(s)	873
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	1 cut(s)	995
SatI	GCNGC	4 cut(s)	194, 291, 442, 445
Sau3AI	GATC	1 cut(s)	338
Sau96I	GGNCC	2 cut(s)	347, 723
SchI	GAGTC	5 cut(s)	86, 122, 484, 818, 824
ScrFI	CCNGG	2 cut(s)	277, 575
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	1 cut(s)	643
Sfr303I	CCGCGG	1 cut(s)	873
SgrBI	CCGCGG	1 cut(s)	873
Sse9I	AATT	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	6 cut(s)	310, 323, 445, 747, 870, 872
SspI	AATATT	1 cut(s)	1027
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	2 cut(s)	275, 573
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	3 cut(s)	183, 189, 466
TaqI	TCGA	2 cut(s)	68, 337
TasI	AATT	1 cut(s)	145
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	2 cut(s)	362, 565
Tru1I	TTAA	1 cut(s)	995
Tru9I	TTAA	1 cut(s)	995
TscAI	CASTG	2 cut(s)	364, 775
TseFI	GTSAC	2 cut(s)	183, 1012
TseI	GCWGC	3 cut(s)	193, 290, 441
Tsp45I	GTSAC	2 cut(s)	183, 1012
TspDTI	ATGAA	5 cut(s)	207, 578, 899, 962, 1020
TspRI	CASTG	2 cut(s)	364, 775
Van91I	CCANNNNNTGG	1 cut(s)	580
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.