RLG00000008702

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001441
Physical Location & Seq
Forward (+)
35393133 .. 35397889
4757 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008702

Sequence Viewer

Length: 1272 bp
ATGATGGCTCTCCGACTGAGAACCAACCACCACCGAACCCTCACAAACCCATCATCTCTCATTCACCTCTTCTCCACTTCCTCCTCAGACCCACCCGACTCAACTGGCCCAACTGAACCCAATCCCCAGTCCGACTCTACCTCTCTCTCCAACTACTTCAGCGATGTCAAAGCCAGCCTCAGGCAACAGCAACAACACAGGAGCAGACCCACTTCTCAGAACAACAACCCTTCTCTCTCCCGCCCTTCCAAGGCCGCCTCCTTGGAGGAAATCCGCAACAAGCTTGCGGAGTTTCGGCTTCGATCCATTGGGCCAAACCCCACTGCACCTCCACCTCCACCTCCACCTCCACCTCCGAACCCCATTTCGTTTGAGAAGCTCTATAACAAAGACGTGAGCAGCCGCAAGATGGAGTTTCAGTCGATTCGGGAGAGTCTGAAGCTTATAAAGCCCAATGCCGATGAGCAGAATGAGAGGAAGGGTGAGGGTTTGCCGAAGTTGAGGTTTCGGAAAAGTTTGGATATGAATCCCAGCCAGGATGCGGGTGTTAGGGAGGGAGCACTTCCGAGTTTTTTTTATAAGGAGAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACCGAGTTTGTGAAGATTTATAGCTATAAACAGTTGGGGGAGAAGCTGAGCGAGTTGAGGCCCGAGGAGGGGAAGGAGTTTACATTGAGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTGTTTGTGGACTTGAGGCACGGCTTGGAGACCCTGAAGATATCCCAACAAGAGGAGAAGCATAGGAAAACTTCGAGGCAGAGGCTTCGTTTGATAGATATAGGTCAAACTCCTGAGTATATGATGAAACCCCCGAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGATAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAACATCTATCTTCAGTTTTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGAAAGAAGCTATTAAAGTATCTTCGAAGAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCAAACTAGGTCTCCGGGACACGCCAGATGTCAAACAAGAGTACAAGAAACATTACAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

424

Amino Acids

48.62

Weight (kDa)

9.73

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 333 - 408 1.7e-23 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 446, 579
AciI CCGC 7 cut(s) 241, 255, 274, 287, 403, 542, 597
AclWI GGATC 1 cut(s) 297
AcsI RAATTY 1 cut(s) 1007
AcuI CTGAAG 4 cut(s) 142, 458, 839, 1071
AfaI GTAC 1 cut(s) 1250
AfiI CCNNNNNNNGG 8 cut(s) 180, 250, 409, 541, 692, 693, 835, 923
AflII CTTAAG 1 cut(s) 1118
AflIII ACRYGT 1 cut(s) 957
AgsI TTSAA 3 cut(s) 622, 1049, 1130
AjiI CACGTC 1 cut(s) 394
AjnI CCWGG 1 cut(s) 534
AjuI GAANNNNNNNTTGG 2 cut(s) 911, 943
AluBI AGCT 9 cut(s) 283, 379, 442, 609, 648, 670, 976, 988, 1156
AluI AGCT 9 cut(s) 283, 379, 442, 609, 648, 670, 976, 988, 1156
Alw21I GWGCWC 2 cut(s) 562, 611
Alw26I GTCTC 4 cut(s) 594, 774, 806, 1223
AlwI GGATC 1 cut(s) 297
Ama87I CYCGRG 2 cut(s) 686, 771
AoxI GGCC 4 cut(s) 106, 252, 311, 683
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 1 cut(s) 1007
Asp700I GAANNNNTTC 1 cut(s) 941
AspS9I GGNCC 3 cut(s) 107, 311, 684
AsuC2I CCSGG 1 cut(s) 1223
AsuHPI GGTGA 2 cut(s) 56, 494
AsuII TTCGAA 1 cut(s) 1171
AvaI CYCGRG 2 cut(s) 686, 771
AxyI CCTNAGG 1 cut(s) 179
BanII GRGCYC 1 cut(s) 611
BauI CACGAG 1 cut(s) 1041
BbsI GAAGAC 3 cut(s) 629, 954, 1118
Bbv12I GWGCWC 2 cut(s) 562, 611
BbvI GCAGC 1 cut(s) 411
BccI CCATC 4 cut(s) 58, 403, 742, 954
BceAI ACGGC 1 cut(s) 820
BcgI CGANNNNNNTGC 2 cut(s) 851, 885
BciT130I CCWGG 1 cut(s) 536
BcnI CCSGG 1 cut(s) 1223
BcoDI GTCTC 4 cut(s) 594, 774, 806, 1223
BfaI CTAG 1 cut(s) 1214
BfmI CTRYAG 1 cut(s) 966
BfrI CTTAAG 1 cut(s) 1118
BisI GCNGC 3 cut(s) 255, 400, 403
BlpI GCTNAGC 1 cut(s) 671
BlsI GCNGC 3 cut(s) 256, 401, 404
Bme1390I CCNGG 2 cut(s) 536, 1223
BmeT110I CYCGRG 2 cut(s) 686, 771
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 3 cut(s) 107, 311, 684
BmrFI CCNGG 2 cut(s) 536, 1223
BmrI ACTGGG 2 cut(s) 121, 1192
BmsI GCATC 2 cut(s) 529, 604
BmuI ACTGGG 2 cut(s) 121, 1192
BpiI GAAGAC 3 cut(s) 629, 954, 1118
Bpu1102I GCTNAGC 1 cut(s) 671
Bpu14I TTCGAA 1 cut(s) 1171
BpuEI CTTGAG 1 cut(s) 817
BpuMI CCSGG 1 cut(s) 1223
BsaBI GATNNNNATC 1 cut(s) 525
BsaI GGTCTC 2 cut(s) 806, 1223
BsaJI CCNNGG 3 cut(s) 249, 261, 687
Bsc4I CCNNNNNNNGG 8 cut(s) 180, 250, 409, 541, 692, 693, 835, 923
Bse1I ACTGG 3 cut(s) 109, 127, 1187
Bse21I CCTNAGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 1140
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 3 cut(s) 249, 261, 687
BseGI GGATG 4 cut(s) 544, 619, 750, 946
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 8 cut(s) 180, 250, 409, 541, 692, 693, 835, 923
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 7 cut(s) 8, 99, 193, 230, 662, 756, 888
BseNI ACTGG 3 cut(s) 109, 127, 1187
BseRI GAGGAG 4 cut(s) 73, 704, 851, 1159
BseXI GCAGC 1 cut(s) 411
BseYI CCCAGC 1 cut(s) 530
BsgI GTGCAG 3 cut(s) 309, 1023, 1160
BshFI GGCC 4 cut(s) 108, 254, 313, 685
BsiHKAI GWGCWC 2 cut(s) 562, 611
BsiHKCI CYCGRG 2 cut(s) 686, 771
BsiSI CCGG 1 cut(s) 1222
BslFI GGGAC 2 cut(s) 1199, 1238
BslI CCNNNNNNNGG 8 cut(s) 180, 250, 409, 541, 692, 693, 835, 923
BsmAI GTCTC 4 cut(s) 594, 774, 806, 1223
BsmFI GGGAC 2 cut(s) 1199, 1238
BsmI GAATGC 1 cut(s) 1111
BsnI GGCC 4 cut(s) 108, 254, 313, 685
Bso31I GGTCTC 2 cut(s) 806, 1223
BsoBI CYCGRG 2 cut(s) 686, 771
Bsp119I TTCGAA 1 cut(s) 1171
Bsp1286I GDGCHC 2 cut(s) 562, 611
Bsp143I GATC 2 cut(s) 302, 1071
Bsp1720I GCTNAGC 1 cut(s) 671
BspACI CCGC 7 cut(s) 241, 255, 274, 287, 403, 542, 597
BspANI GGCC 4 cut(s) 108, 254, 313, 685
BspCNI CTCAG 7 cut(s) 9, 98, 192, 229, 663, 757, 889
BspMAI CTGCAG 1 cut(s) 970
BspPI GGATC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 1171
BspTI CTTAAG 1 cut(s) 1118
BspTNI GGTCTC 2 cut(s) 806, 1223
BsrDI GCAATG 1 cut(s) 1140
BsrI ACTGG 3 cut(s) 109, 127, 1187
BssECI CCNNGG 3 cut(s) 249, 261, 687
BssMI GATC 2 cut(s) 302, 1071
BssSI CACGAG 1 cut(s) 1041
BssT1I CCWWGG 2 cut(s) 249, 261
Bst2BI CACGAG 1 cut(s) 1041
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 1 cut(s) 657
Bst6I CTCTTC 2 cut(s) 74, 747
BstAFI CTTAAG 1 cut(s) 1118
BstBI TTCGAA 1 cut(s) 1171
BstC8I GCNNGC 2 cut(s) 175, 285
BstDEI CTNAG 8 cut(s) 17, 85, 179, 216, 671, 765, 897, 1068
BstF5I GGATG 4 cut(s) 544, 619, 750, 946
BstKTI GATC 2 cut(s) 305, 1074
BstMAI GTCTC 4 cut(s) 594, 774, 806, 1223
BstMBI GATC 2 cut(s) 302, 1071
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 536
BstNSI RCATGY 1 cut(s) 961
BstSCI CCNGG 2 cut(s) 534, 1221
BstSFI CTRYAG 1 cut(s) 966
BstV1I GCAGC 1 cut(s) 411
BstV2I GAAGAC 3 cut(s) 629, 954, 1118
Bsu36I CCTNAGG 1 cut(s) 179
BsuRI GGCC 4 cut(s) 108, 254, 313, 685
BtgZI GCGATG 1 cut(s) 177
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 4 cut(s) 544, 619, 750, 946
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 2 cut(s) 175, 285
Cfr13I GGNCC 3 cut(s) 107, 311, 684
Csp6I GTAC 1 cut(s) 1249
CviAII CATG 1 cut(s) 958
CviQI GTAC 1 cut(s) 1249
DdeI CTNAG 8 cut(s) 17, 85, 179, 216, 671, 765, 897, 1068
DpnI GATC 2 cut(s) 304, 1073
DpnII GATC 2 cut(s) 302, 1071
DraI TTTAAA 1 cut(s) 1012
Eam1104I CTCTTC 2 cut(s) 74, 747
EarI CTCTTC 2 cut(s) 74, 747
Ecl136II GAGCTC 1 cut(s) 609
Eco130I CCWWGG 2 cut(s) 249, 261
Eco24I GRGCYC 1 cut(s) 611
Eco31I GGTCTC 2 cut(s) 806, 1223
Eco32I GATATC 1 cut(s) 825
Eco53kI GAGCTC 1 cut(s) 609
Eco57I CTGAAG 4 cut(s) 142, 458, 839, 1071
Eco81I CCTNAGG 1 cut(s) 179
Eco88I CYCGRG 2 cut(s) 686, 771
EcoICRI GAGCTC 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 534
EcoRV GATATC 1 cut(s) 825
EcoT14I CCWWGG 2 cut(s) 249, 261
EcoT22I ATGCAT 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 611
ErhI CCWWGG 2 cut(s) 249, 261
FaeI CATG 1 cut(s) 961
FalI AAGNNNNNCTT 2 cut(s) 911, 943
FaqI GGGAC 2 cut(s) 1199, 1238
FatI CATG 1 cut(s) 957
FauI CCCGC 2 cut(s) 248, 535
Fnu4HI GCNGC 3 cut(s) 255, 400, 403
FokI GGATG 4 cut(s) 551, 626, 757, 933
FriOI GRGCYC 1 cut(s) 611
Fsp4HI GCNGC 3 cut(s) 255, 400, 403
FspBI CTAG 1 cut(s) 1214
GluI GCNGC 3 cut(s) 255, 400, 403
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 4 cut(s) 108, 254, 313, 685
HapII CCGG 1 cut(s) 1222
Hin1II CATG 1 cut(s) 961
HindIII AAGCTT 2 cut(s) 281, 440
HinfI GANTC 9 cut(s) 98, 134, 424, 433, 526, 761, 767, 1022, 1187
HpaII CCGG 1 cut(s) 1222
HphI GGTGA 2 cut(s) 56, 494
Hpy166II GTNNAC 2 cut(s) 705, 793
Hpy188III TCNNGA 3 cut(s) 428, 896, 950
Hpy8I GTNNAC 2 cut(s) 705, 793
HpyAV CCTTC 7 cut(s) 240, 255, 472, 580, 691, 913, 917
HpyCH4III ACNGT 1 cut(s) 657
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 5 cut(s) 326, 617, 968, 1040, 1141
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 8 cut(s) 17, 85, 179, 216, 671, 765, 897, 1068
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 1 cut(s) 961
Kzo9I GATC 2 cut(s) 302, 1071
LmnI GCTCC 2 cut(s) 201, 557
Lsp1109I GCAGC 1 cut(s) 411
LweI GCATC 2 cut(s) 529, 604
MaeI CTAG 1 cut(s) 1214
MaeII ACGT 1 cut(s) 393
MalI GATC 2 cut(s) 304, 1073
MboI GATC 2 cut(s) 302, 1071
MhlI GDGCHC 2 cut(s) 562, 611
MluCI AATT 3 cut(s) 981, 1007, 1267
MlyI GAGTC 7 cut(s) 92, 128, 442, 770, 776, 1031, 1181
MmeI TCCRAC 3 cut(s) 37, 156, 174
Mph1103I ATGCAT 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 941
MseI TTAA 4 cut(s) 1011, 1119, 1160, 1270
MspCI CTTAAG 1 cut(s) 1118
MspI CCGG 1 cut(s) 1222
MspR9I CCNGG 2 cut(s) 536, 1223
Mva1269I GAATGC 1 cut(s) 1111
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 1 cut(s) 448
NciI CCSGG 1 cut(s) 1223
NdeII GATC 2 cut(s) 302, 1071
NlaIII CATG 1 cut(s) 961
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 1 cut(s) 961
NspV TTCGAA 1 cut(s) 1171
PciI ACATGT 1 cut(s) 957
PctI GAATGC 1 cut(s) 1111
PdmI GAANNNNTTC 1 cut(s) 941
PfeI GAWTC 2 cut(s) 424, 526
PfoI TCCNGGA 1 cut(s) 1221
PkrI GCNGC 3 cut(s) 256, 401, 404
PleI GAGTC 7 cut(s) 92, 128, 441, 769, 775, 1030, 1181
PpsI GAGTC 7 cut(s) 92, 128, 441, 769, 775, 1030, 1181
PscI ACATGT 1 cut(s) 957
PsiI TTATAA 2 cut(s) 446, 579
Psp124BI GAGCTC 1 cut(s) 611
Psp6I CCWGG 1 cut(s) 534
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 534
PspPI GGNCC 3 cut(s) 107, 311, 684
PstI CTGCAG 1 cut(s) 970
RsaI GTAC 1 cut(s) 1250
RsaNI GTAC 1 cut(s) 1249
SacI GAGCTC 1 cut(s) 611
SaqAI TTAA 4 cut(s) 1011, 1119, 1160, 1270
SatI GCNGC 3 cut(s) 255, 400, 403
Sau3AI GATC 2 cut(s) 302, 1071
Sau96I GGNCC 3 cut(s) 107, 311, 684
SchI GAGTC 7 cut(s) 92, 128, 442, 770, 776, 1031, 1181
ScrFI CCNGG 2 cut(s) 536, 1223
SduI GDGCHC 2 cut(s) 562, 611
SfaNI GCATC 2 cut(s) 529, 604
SfcI CTRYAG 1 cut(s) 966
SfuI TTCGAA 1 cut(s) 1171
SmlI CTYRAG 2 cut(s) 796, 1118
SmoI CTYRAG 2 cut(s) 796, 1118
Sse9I AATT 3 cut(s) 981, 1007, 1267
SsiI CCGC 7 cut(s) 241, 255, 274, 287, 403, 542, 597
SspMI CTAG 1 cut(s) 1214
SstI GAGCTC 1 cut(s) 611
StyD4I CCNGG 2 cut(s) 534, 1221
StyI CCWWGG 2 cut(s) 249, 261
TaaI ACNGT 1 cut(s) 657
TaiI ACGT 1 cut(s) 396
TaqI TCGA 4 cut(s) 301, 422, 857, 1171
TaqII GACCGA 1 cut(s) 641
TasI AATT 3 cut(s) 981, 1007, 1267
TatI WGTACW 1 cut(s) 1248
TauI GCSGC 2 cut(s) 257, 405
TfiI GAWTC 2 cut(s) 424, 526
Tru1I TTAA 4 cut(s) 1011, 1119, 1160, 1270
Tru9I TTAA 4 cut(s) 1011, 1119, 1160, 1270
TscAI CASTG 1 cut(s) 328
TseI GCWGC 1 cut(s) 399
TspDTI ATGAA 3 cut(s) 539, 923, 1020
TspRI CASTG 1 cut(s) 328
Vha464I CTTAAG 1 cut(s) 1118
XapI RAATTY 1 cut(s) 1007
XceI RCATGY 1 cut(s) 961
XmnI GAANNNNTTC 1 cut(s) 941
XspI CTAG 1 cut(s) 1214
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.