Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000882.1

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Forward (+)

246836 .. 248406

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000882.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgcccaatgccgatgagcagaatgagaggaggaagggtgagggtttgccgttgttgaggttttcgaaaagtttggatatgaatcccacccaggatgcgggtgttagcaagggagcacttccgagtttgttttataaggacaaggagagaagcggagacaagagctcgaatgcattgaagaccgagtttgtgaagatttatagctataaagagttgggggagaagctgagcaagttgagacccgaggaggggaaggagtttacattgggggagttgagtgagaggttggtcaagttgaggatgatggaagagaatgagtctgagtctcgggttgggggagtgtatgaggacttcaggcacagcttggagatcatcaagatatctcaagaagaggagaagcattggaaaacttcgaggcagaggcttcgtatcatagatataggtcaaactcctgagtatatgatgaagcccccgaaggaaggcttggttgagaaggcaagtagagttcctttatcttttgcattaccttatttccatccagcgtatttccatccagataacatgtcttctgtagaaaagctgaaaattgagcttggcaaagttagagatgaatttaaaatgtcagagtcagattgtggttctgcacgagttcaaggtatgggttttgatattgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

225

Amino Acids

25.83

Weight (kDa)

6.49

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AciI	CCGC	2 cut(s)	98, 153
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	1 cut(s)	337
AfiI	CCNNNNNNNGG	4 cut(s)	97, 248, 249, 479
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	2 cut(s)	178, 653
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	6 cut(s)	165, 204, 226, 363, 580, 592
AluI	AGCT	6 cut(s)	165, 204, 226, 363, 580, 592
Alw21I	GWGCWC	2 cut(s)	118, 167
Alw26I	GTCTC	3 cut(s)	150, 232, 330
Ama87I	CYCGRG	2 cut(s)	242, 327
ApoI	RAATTY	1 cut(s)	611
AsuHPI	GGTGA	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	2 cut(s)	242, 327
BanII	GRGCYC	1 cut(s)	167
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BauI	CACGAG	1 cut(s)	645
BbsI	GAAGAC	2 cut(s)	185, 558
Bbv12I	GWGCWC	2 cut(s)	118, 167
BccI	CCATC	3 cut(s)	298, 543, 558
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	3 cut(s)	150, 232, 330
BfmI	CTRYAG	1 cut(s)	570
BlpI	GCTNAGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	92
BmeT110I	CYCGRG	2 cut(s)	242, 327
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	85
BpiI	GAAGAC	2 cut(s)	185, 558
Bpu1102I	GCTNAGC	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	90, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 248, 249, 479
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	90, 243
BseGI	GGATG	4 cut(s)	100, 306, 535, 550
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	4 cut(s)	97, 248, 249, 479
BseMII	CTCAG	3 cut(s)	218, 312, 444
BseRI	GAGGAG	3 cut(s)	43, 260, 407
BsgI	GTGCAG	1 cut(s)	627
BsiHKAI	GWGCWC	2 cut(s)	118, 167
BsiHKCI	CYCGRG	2 cut(s)	242, 327
BslI	CCNNNNNNNGG	4 cut(s)	97, 248, 249, 479
BsmAI	GTCTC	3 cut(s)	150, 232, 330
BsmI	GAATGC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	2 cut(s)	242, 327
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	118, 167
Bsp143I	GATC	1 cut(s)	369
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	2 cut(s)	98, 153
BspCNI	CTCAG	3 cut(s)	219, 313, 445
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	90, 243
BssMI	GATC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	303, 384
BstBI	TTCGAA	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	227, 321, 453
BstF5I	GGATG	4 cut(s)	100, 306, 535, 550
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	3 cut(s)	150, 232, 330
BstMBI	GATC	1 cut(s)	369
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	570
BstV2I	GAAGAC	2 cut(s)	185, 558
BtsCI	GGATG	4 cut(s)	100, 306, 535, 550
CviAII	CATG	1 cut(s)	562
CviJI	RGCY	9 cut(s)	165, 204, 226, 363, 424, 469, 483, 580, 592
CviKI_1	RGCY	9 cut(s)	165, 204, 226, 363, 424, 469, 483, 580, 592
DdeI	CTNAG	3 cut(s)	227, 321, 453
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
DraI	TTTAAA	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	303, 384
EarI	CTCTTC	2 cut(s)	303, 384
Ecl136II	GAGCTC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	337
Eco88I	CYCGRG	2 cut(s)	242, 327
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	167
FaeI	CATG	1 cut(s)	565
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FatI	CATG	1 cut(s)	561
FauI	CCCGC	1 cut(s)	91
FokI	GGATG	4 cut(s)	107, 313, 522, 537
FriOI	GRGCYC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	565
HinfI	GANTC	4 cut(s)	82, 317, 323, 626
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	4 cut(s)	123, 322, 625, 631
Hpy188III	TCNNGA	4 cut(s)	376, 386, 452, 554
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	5 cut(s)	28, 247, 469, 473, 487
HpyCH4V	TGCA	3 cut(s)	173, 521, 644
HpyF3I	CTNAG	3 cut(s)	227, 321, 453
Hsp92II	CATG	1 cut(s)	565
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	6 cut(s)	77, 104, 340, 465, 552, 567
LweI	GCATC	1 cut(s)	85
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	5 cut(s)	190, 205, 320, 401, 558
MhlI	GDGCHC	2 cut(s)	118, 167
MluCI	AATT	2 cut(s)	585, 611
MlyI	GAGTC	3 cut(s)	326, 332, 635
Mph1103I	ATGCAT	1 cut(s)	175
MseI	TTAA	1 cut(s)	615
MspR9I	CCNGG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	92
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	565
NspV	TTCGAA	1 cut(s)	65
PciI	ACATGT	1 cut(s)	561
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	82
PleI	GAGTC	3 cut(s)	325, 331, 634
PpsI	GAGTC	3 cut(s)	325, 331, 634
PscI	ACATGT	1 cut(s)	561
PsiI	TTATAA	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	615
Sau3AI	GATC	1 cut(s)	369
SchI	GAGTC	3 cut(s)	326, 332, 635
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	118, 167
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	2 cut(s)	585, 611
SsiI	CCGC	2 cut(s)	98, 153
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	90
TaqI	TCGA	3 cut(s)	65, 167, 413
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	585, 611
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TspDTI	ATGAA	3 cut(s)	95, 479, 624
XapI	RAATTY	1 cut(s)	611
XceI	RCATGY	1 cut(s)	565
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.