RchiOBHm_Chr2g0133511

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001441
Physical Location & Seq
Reverse (-)
50387740 .. 50392809
5070 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50467

Sequence Viewer

Length: 1290 bp
ATGATGGCTCTCCGACTGAGAACCAACCACCGAACCCTCACAAACCCATCTCTCATTCACCTCTTCTCGACTTCCTCCCCAGACCCATCCGACTCAACCGACCCAACTGAACCCAACCCCCAGTCCGACTCCTCCTCTCTCTCCAATTACTTCAGCGATGTCAAAGCCAGCCTCAGGCAACAGTCACAGTCCCAGTCCCAGTCACAGCAACTACACTTCAGACCCACTTCTCAGAACAACAACCCTTCTCTCTCCCGGCCTTCCAAGGCTGCCTCTTTGGAGGAAATCCGCAAAAACCTTGCGGAGTTTCGGCTTCGATCCATTGGGCCAAACCCCACTGAATCAAACTCTGCACCTCCACCTCCACCTCCACCTCCGAACCCCATTTCGTTTGAGAAGCTCTATAACAAAGGCGTGAGCAGCCGCAAGATGGAGTTTCAGACGGTTCGGGAGAGTCTGAAGCTCATAAGGCCCAATGCGAATGAGCAGAATGAGAGGAAGGGTAGGGGATTGTCGTTGTTGAGGTCCAAAAGTTTGGATATGAATCCGAGCCAGGATGTGGGTGTTAGGAAGGGAGCACTTACAAGTTTGTTTGGTAAGGAGAAGGAGAGAAGTGGAGAGAAGAGCTTGGATGCATTGAAGACTGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGGAAGTTGAGGCCCGAGGAAGGGAAGGAAGGGGGCGGGTTTACATTGGGGGAGTTCAGTGAGAGGTTGGTCAAGTTGAGGAAGATGGAAGAGAATGAGTCCGAGTCTTGGGTTGGGGGATTGAATACTAACTTGACGCAGAGCTTGTTGAAGATAGCCGCGGAGGAGAAGCATAGGAAAACTCCGATGCAGAGGCTTCATATGATAGATATAGGTCAAACTCCTGATTATATGATGAAACCCCCAAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGCTAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAGTTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAGCATCTATCTTCAGTTCTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGGAAAAAGCTATTAAAGTATCTCCGAAGAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCAAACTTGGTCTCCGGGACACGCCAGATGCCAAACAAGAGTACAAGAAACATTACAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

429

Amino Acids

48.72

Weight (kDa)

9.79

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 339 - 414 1.7e-23 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 559
AccII CGCG 1 cut(s) 851
AciI CCGC 6 cut(s) 289, 302, 424, 726, 849, 851
AclWI GGATC 1 cut(s) 312
AcuI CTGAAG 4 cut(s) 136, 202, 479, 1089
AfaI GTAC 1 cut(s) 1268
AfiI CCNNNNNNNGG 7 cut(s) 174, 430, 559, 710, 711, 798, 941
AflII CTTAAG 1 cut(s) 1136
AflIII ACRYGT 1 cut(s) 975
AgsI TTSAA 5 cut(s) 640, 814, 841, 1067, 1148
AjnI CCWGG 1 cut(s) 552
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 1 cut(s) 1241
AlwI GGATC 1 cut(s) 312
Ama87I CYCGRG 1 cut(s) 704
AoxI GGCC 4 cut(s) 257, 326, 470, 701
ApeKI GCWGC 2 cut(s) 269, 420
Asp700I GAANNNNTTC 1 cut(s) 959
AspS9I GGNCC 4 cut(s) 326, 471, 525, 702
AsuC2I CCSGG 2 cut(s) 256, 1241
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 704
AvaII GGWCC 1 cut(s) 525
AxyI CCTNAGG 1 cut(s) 173
BauI CACGAG 1 cut(s) 1059
BbsI GAAGAC 3 cut(s) 647, 972, 1136
Bbv12I GWGCWC 1 cut(s) 580
BbvCI CCTCAGC 1 cut(s) 689
BbvI GCAGC 2 cut(s) 256, 432
BccI CCATC 5 cut(s) 55, 94, 424, 769, 972
BciT130I CCWGG 1 cut(s) 554
BcnI CCSGG 2 cut(s) 256, 1241
BcoDI GTCTC 1 cut(s) 1241
BfmI CTRYAG 1 cut(s) 984
BfrI CTTAAG 1 cut(s) 1136
BisI GCNGC 4 cut(s) 270, 421, 424, 849
BlsI GCNGC 4 cut(s) 271, 422, 425, 850
Bme1390I CCNGG 3 cut(s) 256, 554, 1241
Bme18I GGWCC 1 cut(s) 525
BmeT110I CYCGRG 1 cut(s) 704
BmgT120I GGNCC 4 cut(s) 326, 471, 525, 702
BmrFI CCNGG 3 cut(s) 256, 554, 1241
BmrI ACTGGG 4 cut(s) 115, 187, 193, 1210
BmsI GCATC 4 cut(s) 622, 867, 1105, 1243
BmuI ACTGGG 4 cut(s) 115, 187, 193, 1210
BpiI GAAGAC 3 cut(s) 647, 972, 1136
Bpu10I CCTNAGC 1 cut(s) 689
BpuMI CCSGG 2 cut(s) 256, 1241
BsaBI GATNNNNATC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 1241
BsaJI CCNNGG 3 cut(s) 264, 705, 849
BsaXI ACNNNNNCTCC 2 cut(s) 1221, 1251
Bsc4I CCNNNNNNNGG 7 cut(s) 174, 430, 559, 710, 711, 798, 941
Bse1I ACTGG 4 cut(s) 121, 193, 199, 1205
Bse21I CCTNAGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 1158
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 3 cut(s) 264, 705, 849
BseGI GGATG 4 cut(s) 86, 562, 637, 964
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 7 cut(s) 174, 430, 559, 710, 711, 798, 941
BseMI GCAATG 1 cut(s) 1158
BseMII CTCAG 5 cut(s) 8, 187, 245, 636, 680
BseNI ACTGG 4 cut(s) 121, 193, 199, 1205
BseRI GAGGAG 4 cut(s) 121, 124, 869, 1177
BseXI GCAGC 2 cut(s) 256, 432
BsgI GTGCAG 3 cut(s) 336, 1041, 1178
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 4 cut(s) 259, 328, 472, 703
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 704
BsiSI CCGG 2 cut(s) 256, 1240
BslFI GGGAC 4 cut(s) 175, 181, 1217, 1256
BslI CCNNNNNNNGG 7 cut(s) 174, 430, 559, 710, 711, 798, 941
BsmAI GTCTC 1 cut(s) 1241
BsmFI GGGAC 4 cut(s) 175, 181, 1217, 1256
BsmI GAATGC 1 cut(s) 1129
BsnI GGCC 4 cut(s) 259, 328, 472, 703
Bso31I GGTCTC 1 cut(s) 1241
BsoBI CYCGRG 1 cut(s) 704
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 2 cut(s) 317, 1089
BspACI CCGC 6 cut(s) 289, 302, 424, 726, 849, 851
BspANI GGCC 4 cut(s) 259, 328, 472, 703
BspCNI CTCAG 5 cut(s) 9, 186, 244, 637, 681
BspFNI CGCG 1 cut(s) 851
BspMAI CTGCAG 1 cut(s) 988
BspPI GGATC 1 cut(s) 312
BspQI GCTCTTC 1 cut(s) 617
BspTI CTTAAG 1 cut(s) 1136
BspTNI GGTCTC 1 cut(s) 1241
BsrDI GCAATG 1 cut(s) 1158
BsrI ACTGG 4 cut(s) 121, 193, 199, 1205
BssECI CCNNGG 3 cut(s) 264, 705, 849
BssMI GATC 2 cut(s) 317, 1089
BssSI CACGAG 1 cut(s) 1059
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 1059
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 183, 189, 445
Bst6I CTCTTC 3 cut(s) 68, 617, 774
BstAFI CTTAAG 1 cut(s) 1136
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 6 cut(s) 17, 173, 231, 645, 689, 1086
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 4 cut(s) 86, 562, 637, 964
BstFNI CGCG 1 cut(s) 851
BstKTI GATC 2 cut(s) 320, 1092
BstMAI GTCTC 1 cut(s) 1241
BstMBI GATC 2 cut(s) 317, 1089
BstMWI GCNNNNNNNGC 2 cut(s) 420, 469
BstNI CCWGG 1 cut(s) 554
BstNSI RCATGY 1 cut(s) 979
BstSCI CCNGG 3 cut(s) 254, 552, 1239
BstSFI CTRYAG 1 cut(s) 984
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 2 cut(s) 256, 432
BstV2I GAAGAC 3 cut(s) 647, 972, 1136
BstXI CCANNNNNNTGG 1 cut(s) 535
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 4 cut(s) 259, 328, 472, 703
BtgI CCRYGG 1 cut(s) 849
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 4 cut(s) 86, 562, 637, 964
BtsIMutI CAGTG 2 cut(s) 336, 754
Cac8I GCNNGC 1 cut(s) 169
Cfr13I GGNCC 4 cut(s) 326, 471, 525, 702
Cfr42I CCGCGG 1 cut(s) 852
CseI GACGC 1 cut(s) 835
Csp6I GTAC 1 cut(s) 1267
CviAII CATG 1 cut(s) 976
CviQI GTAC 1 cut(s) 1267
DdeI CTNAG 6 cut(s) 17, 173, 231, 645, 689, 1086
DpnI GATC 2 cut(s) 319, 1091
DpnII GATC 2 cut(s) 317, 1089
DraI TTTAAA 1 cut(s) 1030
Eam1104I CTCTTC 3 cut(s) 68, 617, 774
EarI CTCTTC 3 cut(s) 68, 617, 774
Eco130I CCWWGG 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 1241
Eco47I GGWCC 1 cut(s) 525
Eco57I CTGAAG 4 cut(s) 136, 202, 479, 1089
Eco81I CCTNAGG 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 704
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 979
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FaqI GGGAC 4 cut(s) 175, 181, 1217, 1256
FatI CATG 1 cut(s) 975
FauI CCCGC 1 cut(s) 719
FauNDI CATATG 1 cut(s) 891
Fnu4HI GCNGC 4 cut(s) 270, 421, 424, 849
FokI GGATG 4 cut(s) 73, 569, 644, 951
Fsp4HI GCNGC 4 cut(s) 270, 421, 424, 849
GluI GCNGC 4 cut(s) 270, 421, 424, 849
HaeIII GGCC 4 cut(s) 259, 328, 472, 703
HapII CCGG 2 cut(s) 256, 1240
HgaI GACGC 1 cut(s) 835
Hin1II CATG 1 cut(s) 979
HinfI GANTC 9 cut(s) 92, 128, 341, 454, 544, 788, 794, 1040, 1205
HpaII CCGG 2 cut(s) 256, 1240
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 732
Hpy188III TCNNGA 3 cut(s) 67, 449, 914
Hpy8I GTNNAC 1 cut(s) 732
HpyAV CCTTC 9 cut(s) 255, 270, 493, 565, 598, 704, 709, 713, 935
HpyCH4III ACNGT 3 cut(s) 183, 189, 445
HpyCH4V TGCA 6 cut(s) 353, 635, 880, 986, 1058, 1159
HpyF10VI GCNNNNNNNGC 2 cut(s) 420, 469
HpyF3I CTNAG 6 cut(s) 17, 173, 231, 645, 689, 1086
Hsp92II CATG 1 cut(s) 979
KspI CCGCGG 1 cut(s) 852
Kzo9I GATC 2 cut(s) 317, 1089
LguI GCTCTTC 1 cut(s) 617
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 2 cut(s) 256, 432
LweI GCATC 4 cut(s) 622, 867, 1105, 1243
MaeIII GTNAC 2 cut(s) 183, 201
MalI GATC 2 cut(s) 319, 1091
MboI GATC 2 cut(s) 317, 1089
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 3 cut(s) 145, 999, 1285
MlyI GAGTC 7 cut(s) 86, 122, 463, 797, 803, 1049, 1199
MmeI TCCRAC 3 cut(s) 37, 114, 150
Mph1103I ATGCAT 1 cut(s) 637
MroXI GAANNNNTTC 1 cut(s) 959
MseI TTAA 3 cut(s) 1029, 1137, 1178
MspA1I CMGCKG 1 cut(s) 851
MspCI CTTAAG 1 cut(s) 1136
MspI CCGG 2 cut(s) 256, 1240
MspR9I CCNGG 3 cut(s) 256, 554, 1241
Mva1269I GAATGC 1 cut(s) 1129
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 2 cut(s) 420, 469
NciI CCSGG 2 cut(s) 256, 1241
NdeI CATATG 1 cut(s) 891
NdeII GATC 2 cut(s) 317, 1089
NlaIII CATG 1 cut(s) 979
NmuCI GTSAC 2 cut(s) 183, 201
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 1 cut(s) 979
PciI ACATGT 1 cut(s) 975
PciSI GCTCTTC 1 cut(s) 617
PctI GAATGC 1 cut(s) 1129
PdmI GAANNNNTTC 1 cut(s) 959
PfeI GAWTC 2 cut(s) 341, 544
PflMI CCANNNNNTGG 1 cut(s) 559
PfoI TCCNGGA 1 cut(s) 1239
PkrI GCNGC 4 cut(s) 271, 422, 425, 850
PleI GAGTC 7 cut(s) 86, 122, 462, 796, 802, 1048, 1199
PpsI GAGTC 7 cut(s) 86, 122, 462, 796, 802, 1048, 1199
PscI ACATGT 1 cut(s) 975
Psp6I CCWGG 1 cut(s) 552
PspGI CCWGG 1 cut(s) 552
PspPI GGNCC 4 cut(s) 326, 471, 525, 702
PstI CTGCAG 1 cut(s) 988
RsaI GTAC 1 cut(s) 1268
RsaNI GTAC 1 cut(s) 1267
SacII CCGCGG 1 cut(s) 852
SapI GCTCTTC 1 cut(s) 617
SaqAI TTAA 3 cut(s) 1029, 1137, 1178
SatI GCNGC 4 cut(s) 270, 421, 424, 849
Sau3AI GATC 2 cut(s) 317, 1089
Sau96I GGNCC 4 cut(s) 326, 471, 525, 702
SchI GAGTC 7 cut(s) 86, 122, 463, 797, 803, 1049, 1199
ScrFI CCNGG 3 cut(s) 256, 554, 1241
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 4 cut(s) 622, 867, 1105, 1243
SfcI CTRYAG 1 cut(s) 984
Sfr303I CCGCGG 1 cut(s) 852
SgrBI CCGCGG 1 cut(s) 852
SinI GGWCC 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 1136
SmoI CTYRAG 1 cut(s) 1136
Sse9I AATT 3 cut(s) 145, 999, 1285
SsiI CCGC 6 cut(s) 289, 302, 424, 726, 849, 851
StyD4I CCNGG 3 cut(s) 254, 552, 1239
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 183, 189, 445
TaqI TCGA 2 cut(s) 68, 316
TasI AATT 3 cut(s) 145, 999, 1285
TatI WGTACW 1 cut(s) 1266
TauI GCSGC 2 cut(s) 426, 851
TfiI GAWTC 2 cut(s) 341, 544
Tru1I TTAA 3 cut(s) 1029, 1137, 1178
Tru9I TTAA 3 cut(s) 1029, 1137, 1178
TscAI CASTG 2 cut(s) 343, 754
TseFI GTSAC 2 cut(s) 183, 201
TseI GCWGC 2 cut(s) 269, 420
Tsp45I GTSAC 2 cut(s) 183, 201
TspDTI ATGAA 3 cut(s) 557, 878, 941
TspRI CASTG 2 cut(s) 343, 754
Van91I CCANNNNNTGG 1 cut(s) 559
Vha464I CTTAAG 1 cut(s) 1136
VpaK11BI GGWCC 1 cut(s) 525
XceI RCATGY 1 cut(s) 979
XmnI GAANNNNTTC 1 cut(s) 959
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.