Rh2BG461000

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001441
Physical Location & Seq
Forward (+)
65237595 .. 65237978
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG461000.1

Sequence Viewer

Length: 384 bp
ATGCCTAATGCCGATGAGCAGAATGAGAGGAGGAAGGGTGAGGGTTTTCCGTTGTTGAGGTTTCCGAAAAGTTTGGATATGAATCCCACCCAGGATGCGGGTGTTAGCAAGGGAGCACTTCCGAGTTTGTTTTATAAGGACAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAAGACGGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGAAGAAGCTGAGCAAGTTGAGTGAGTGGTTGGTCAAGTTGAGGATGATGGAAGAGAATAAGTCTAAGTCTCGGGTTGGGGGAGTGTATGAGGACTTCAGGCACAGCTTGGAGATCATCAAGATATCTCAAGAAGAGGAGAAGCATAGGAAAACTTCGAGTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

127

Amino Acids

14.67

Weight (kDa)

9.2

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AciI CCGC 2 cut(s) 98, 153
AcuI CTGAAG 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 4 cut(s) 165, 204, 226, 324
AluI AGCT 4 cut(s) 165, 204, 226, 324
Alw21I GWGCWC 2 cut(s) 118, 167
Alw26I GTCTC 2 cut(s) 150, 291
Ama87I CYCGRG 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 288
BanII GRGCYC 1 cut(s) 167
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 118, 167
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 150, 291
BlpI GCTNAGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 2 cut(s) 85, 160
BpiI GAAGAC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 330
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 3 cut(s) 100, 175, 267
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 218
BseRI GAGGAG 2 cut(s) 43, 368
BsiHKAI GWGCWC 2 cut(s) 118, 167
BsiHKCI CYCGRG 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 150, 291
BsoBI CYCGRG 1 cut(s) 288
Bsp1286I GDGCHC 2 cut(s) 118, 167
Bsp143I GATC 1 cut(s) 330
Bsp1720I GCTNAGC 1 cut(s) 227
BspACI CCGC 2 cut(s) 98, 153
BspCNI CTCAG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 264, 345
BstDEI CTNAG 2 cut(s) 227, 282
BstF5I GGATG 3 cut(s) 100, 175, 267
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 2 cut(s) 150, 291
BstMBI GATC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 185
BtsCI GGATG 3 cut(s) 100, 175, 267
CviJI RGCY 4 cut(s) 165, 204, 226, 324
CviKI_1 RGCY 4 cut(s) 165, 204, 226, 324
DdeI CTNAG 2 cut(s) 227, 282
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
Eam1104I CTCTTC 2 cut(s) 264, 345
EarI CTCTTC 2 cut(s) 264, 345
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 342
EcoT22I ATGCAT 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 167
FaiI YATR 6 cut(s) 80, 135, 201, 207, 306, 363
FauI CCCGC 1 cut(s) 91
FokI GGATG 3 cut(s) 107, 182, 274
FriOI GRGCYC 1 cut(s) 167
HinfI GANTC 1 cut(s) 82
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 3 cut(s) 66, 123, 169
Hpy188III TCNNGA 2 cut(s) 337, 347
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 173
HpyF3I CTNAG 2 cut(s) 227, 282
Kzo9I GATC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 3 cut(s) 77, 104, 301
LweI GCATC 2 cut(s) 85, 160
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 5 cut(s) 190, 205, 232, 281, 362
MhlI GDGCHC 2 cut(s) 118, 167
MnlI CCTC 7 cut(s) 21, 24, 34, 51, 252, 301, 346
Mph1103I ATGCAT 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
NdeII GATC 1 cut(s) 330
NsiI ATGCAT 1 cut(s) 175
PfeI GAWTC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
SacI GAGCTC 1 cut(s) 167
Sau3AI GATC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 2 cut(s) 118, 167
SetI ASST 5 cut(s) 62, 167, 206, 228, 326
SfaNI GCATC 2 cut(s) 85, 160
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
SsiI CCGC 2 cut(s) 98, 153
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 90
TaqI TCGA 1 cut(s) 374
TfiI GAWTC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 2 cut(s) 39, 197
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.