Rw2G051980

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001441
Physical Location & Seq
Forward (+)
79785420 .. 79785972
553 bp
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UTR
Exon/CDS
Intron
Rw2G051980.1

Sequence Viewer

Length: 279 bp
ATGGTGATGCTGGTTTACGGAGGTCTATTAACCTTTCCTCTTCCTGATTGTCCTGCAGTGGCACAACTCACAACTAAGATCAAGCATTTGCCTTCAGTTTTACACAAAAAGGATAAGCACTCTCTTAAGGGTCTTCAAGCAATGGTGCAGAGGCGGAAGAGATTATTGAAGTATCTTTGGCGGAGTGATTGGGTTTCTTACTGCCTTTTTCTCTCCAAACTTGGCCTTCGGGACACACCAGATTACAAACAAGAATACAAGAAACATTACAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

92

Amino Acids

10.88

Weight (kDa)

9.97

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 20 - 77 1.9e-14 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 154, 181
AcuI CTGAAG 1 cut(s) 78
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 137, 169
AoxI GGCC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 125
BfaI CTAG 1 cut(s) 277
BfmI CTRYAG 1 cut(s) 54
BfrI CTTAAG 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 225
BslFI GGGAC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 2 cut(s) 154, 181
BspANI GGCC 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 58
BspTI CTTAAG 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 147
BssMI GATC 1 cut(s) 78
Bst6I CTCTTC 2 cut(s) 45, 152
BstAFI CTTAAG 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 75
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
CviJI RGCY 1 cut(s) 225
CviKI_1 RGCY 1 cut(s) 225
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 45, 152
EarI CTCTTC 2 cut(s) 45, 152
EciI GGCGGA 2 cut(s) 169, 196
Eco57I CTGAAG 1 cut(s) 78
FaqI GGGAC 1 cut(s) 245
FspBI CTAG 1 cut(s) 277
HaeIII GGCC 1 cut(s) 225
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 44, 230
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 102, 236
HpyCH4V TGCA 2 cut(s) 56, 148
HpyF3I CTNAG 1 cut(s) 75
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 3 cut(s) 57, 66, 252
MaeI CTAG 1 cut(s) 277
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 3 cut(s) 32, 125, 169
MnlI CCTC 3 cut(s) 14, 48, 144
MseI TTAA 2 cut(s) 29, 126
MspCI CTTAAG 1 cut(s) 125
NdeII GATC 1 cut(s) 78
PstI CTGCAG 1 cut(s) 58
SaqAI TTAA 2 cut(s) 29, 126
Sau3AI GATC 1 cut(s) 78
SetI ASST 2 cut(s) 25, 35
SfcI CTRYAG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 2 cut(s) 154, 181
SspMI CTAG 1 cut(s) 277
Tru1I TTAA 2 cut(s) 29, 126
Tru9I TTAA 2 cut(s) 29, 126
TscAI CASTG 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 63
Vha464I CTTAAG 1 cut(s) 125
XspI CTAG 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.