MD09G1223400.v1.1

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0001441
Physical Location & Seq
Forward (+)
26439172 .. 26449857
10686 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1223400.v1.1.491

Sequence Viewer

Length: 624 bp
ATGTACAGTTATGCAGAGTTGGGGGAGAAGTTGAGGAAGTTGAGGCCGGATGGGAAGGGGCAAAACTGGTTTTCATTGCGGGAGTTAAATAAGAGGCTGATGAAGTTGAGGGAGATGGAAGAGAAGGAGACTCAGGCCGCCATTGGCAACGTTACATTCCAGGATTTACGAGAAAGCTTGTTGAAGTTGCAAAGGTCGGACCAGGAAAAGGCAAAGAAATCATCGATCCAGAGAATTGATATCTTGTCACATATAGGTCGAACTCCAAACTTTATGCTGCAACCTCCAAAGGAAAATTTGGTCGAAAAGTATTTCTATCCAGATAACATGTCTTCTGCAGAAAAACTGAAGCTTGAGCTTGCCAAAGTTAGAGATGAGTTTAAAATGTCAGAGTCGGATTGTGTTTCTGCTCAAGTTCAAGGTTATGTGGAGAGGTGGAGCTTGGACAAGCATTCTCTAAAGGGTCTTCAAGCGATGGTGCAGCAGAGGAAGAGGTTATTTAAGTATCTTCGAAGAACTGACTGGGATTCTTACTGCCTCGTTCTCTCTAAACTTGGTCTCCGAGACAAGCCAGAGTTTCTTTCTAAACTGGGTCTCCGGTACAAGGAAAATCACAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

208

Amino Acids

24.54

Weight (kDa)

9.66

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 140 - 188 8e-11 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 79, 138
AclI AACGTT 1 cut(s) 150
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 2 cut(s) 5, 602
AfiI CCNNNNNNNGG 2 cut(s) 208, 604
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 3 cut(s) 184, 419, 470
AjnI CCWGG 2 cut(s) 159, 201
AluBI AGCT 4 cut(s) 177, 352, 358, 441
AluI AGCT 4 cut(s) 177, 352, 358, 441
Alw26I GTCTC 4 cut(s) 122, 558, 563, 599
AlwI GGATC 1 cut(s) 220
AoxI GGCC 2 cut(s) 44, 135
ApeKI GCWGC 2 cut(s) 277, 481
ApoI RAATTY 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 511
AvaII GGWCC 1 cut(s) 199
BbsI GAAGAC 2 cut(s) 324, 458
BbvI GCAGC 2 cut(s) 264, 493
BccI CCATC 3 cut(s) 44, 109, 469
BciT130I CCWGG 2 cut(s) 161, 203
BcoDI GTCTC 4 cut(s) 122, 558, 563, 599
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 3 cut(s) 138, 278, 482
BlsI GCNGC 3 cut(s) 139, 279, 483
Bme1390I CCNGG 2 cut(s) 161, 203
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 161, 203
BmrI ACTGGG 2 cut(s) 532, 599
BmuI ACTGGG 2 cut(s) 532, 599
BpiI GAAGAC 2 cut(s) 324, 458
Bpu14I TTCGAA 1 cut(s) 511
BpuEI CTTGAG 2 cut(s) 374, 396
Bsa29I ATCGAT 1 cut(s) 224
BsaI GGTCTC 2 cut(s) 563, 599
BsaWI WCCGGW 1 cut(s) 597
BsaXI ACNNNNNCTCC 4 cut(s) 543, 573, 579, 609
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 604
Bse1I ACTGG 3 cut(s) 71, 527, 594
Bse3DI GCAATG 1 cut(s) 74
BseBI CCWGG 2 cut(s) 161, 203
BseCI ATCGAT 1 cut(s) 224
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 208, 604
BseMI GCAATG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 3 cut(s) 71, 527, 594
BseXI GCAGC 2 cut(s) 264, 493
BsgI GTGCAG 1 cut(s) 500
BshFI GGCC 2 cut(s) 46, 137
BshVI ATCGAT 1 cut(s) 224
BsiSI CCGG 2 cut(s) 47, 598
BslI CCNNNNNNNGG 2 cut(s) 208, 604
BsmAI GTCTC 4 cut(s) 122, 558, 563, 599
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 2 cut(s) 46, 137
Bso31I GGTCTC 2 cut(s) 563, 599
Bsp119I TTCGAA 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 2 cut(s) 79, 138
BspANI GGCC 2 cut(s) 46, 137
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 224
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 511
BspTNI GGTCTC 2 cut(s) 563, 599
BsrDI GCAATG 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 71, 527, 594
BssMI GATC 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 161, 203
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 2 cut(s) 114, 485
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 511
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 4 cut(s) 122, 558, 563, 599
BstMBI GATC 1 cut(s) 225
BstNI CCWGG 2 cut(s) 161, 203
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 159, 201
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 264, 493
BstV2I GAAGAC 2 cut(s) 324, 458
Bsu15I ATCGAT 1 cut(s) 224
BsuRI GGCC 2 cut(s) 46, 137
BsuTUI ATCGAT 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 488
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 199
ClaI ATCGAT 1 cut(s) 224
Csp6I GTAC 2 cut(s) 4, 601
CviAII CATG 1 cut(s) 328
CviJI RGCY 8 cut(s) 46, 97, 137, 177, 352, 358, 441, 571
CviKI_1 RGCY 8 cut(s) 46, 97, 137, 177, 352, 358, 441, 571
CviQI GTAC 2 cut(s) 4, 601
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
DraI TTTAAA 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 114, 485
EarI CTCTTC 2 cut(s) 114, 485
Eco31I GGTCTC 2 cut(s) 563, 599
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 159, 201
EcoRV GATATC 1 cut(s) 241
FaeI CATG 1 cut(s) 331
FaiI YATR 6 cut(s) 12, 252, 254, 275, 329, 426
FatI CATG 1 cut(s) 327
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 138, 278, 482
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 138, 278, 482
GluI GCNGC 3 cut(s) 138, 278, 482
HaeIII GGCC 2 cut(s) 46, 137
HapII CCGG 2 cut(s) 47, 598
Hin1II CATG 1 cut(s) 331
HindIII AAGCTT 2 cut(s) 175, 350
HinfI GANTC 3 cut(s) 130, 392, 527
HpaII CCGG 2 cut(s) 47, 598
Hpy188I TCNGA 4 cut(s) 199, 391, 397, 563
Hpy188III TCNNGA 2 cut(s) 229, 320
HpyAV CCTTC 2 cut(s) 49, 118
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 5 cut(s) 14, 190, 280, 338, 481
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 331
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 438
Lsp1109I GCAGC 2 cut(s) 264, 493
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 151, 246
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 6 cut(s) 131, 324, 458, 500, 502, 525
MluCI AATT 3 cut(s) 234, 295, 619
MlyI GAGTC 2 cut(s) 124, 401
MmeI TCCRAC 2 cut(s) 177, 375
MnlI CCTC 9 cut(s) 27, 36, 87, 102, 294, 426, 480, 486, 548
MseI TTAA 3 cut(s) 86, 381, 501
MspI CCGG 2 cut(s) 47, 598
MspR9I CCNGG 2 cut(s) 161, 203
Mva1269I GAATGC 1 cut(s) 451
MvaI CCWGG 2 cut(s) 161, 203
NdeII GATC 1 cut(s) 225
NlaIII CATG 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 246
NspI RCATGY 1 cut(s) 331
NspV TTCGAA 1 cut(s) 511
PciI ACATGT 1 cut(s) 327
PctI GAATGC 1 cut(s) 451
PfeI GAWTC 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 3 cut(s) 139, 279, 483
PleI GAGTC 2 cut(s) 124, 400
PpsI GAGTC 2 cut(s) 124, 400
PscI ACATGT 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 159, 201
PspGI CCWGG 2 cut(s) 159, 201
PspPI GGNCC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 340
RsaI GTAC 2 cut(s) 5, 602
RsaNI GTAC 2 cut(s) 4, 601
SaqAI TTAA 3 cut(s) 86, 381, 501
SatI GCNGC 3 cut(s) 138, 278, 482
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 124, 401
ScrFI CCNGG 2 cut(s) 161, 203
SfcI CTRYAG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 511
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 353, 411
SmoI CTYRAG 2 cut(s) 353, 411
Sse9I AATT 3 cut(s) 234, 295, 619
SsiI CCGC 2 cut(s) 79, 138
StyD4I CCNGG 2 cut(s) 159, 201
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 153
TaqI TCGA 4 cut(s) 224, 259, 303, 511
TasI AATT 3 cut(s) 234, 295, 619
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 3 cut(s) 86, 381, 501
Tru9I TTAA 3 cut(s) 86, 381, 501
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 2 cut(s) 277, 481
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 2 cut(s) 63, 116
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 295
XceI RCATGY 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.