Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017323.1

Orthogroup ID

OG0001441

Physical Location & Seq

Genomic Coordinates Forward (+)

10241 .. 12789

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017323.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgtcttctgcagaaaagctgaaaattgagcttggcaaagttagagatgaatttaaaatgtcagagtcagattgtggttctgcacgagttcaagtggcacaactcacaactaagatcaagcatctatcttcagttctacacaaaaaggataagcattcactcaagggtcttcaagcaatggtgcagaggaggaaaaagctattaaagtatctccgaagaactgactgggactcttactgccttgttctctccaaacttggtctccgggacacgccagatgccaaacaagagtacaagaaacattacaagaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S15

Protein Analysis

104

Amino Acids

12.12

Weight (kDa)

9.93

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15810 AT1G80620
fragaria_vesca	FvH4_6g28960
malus_domestica	MD09G1223400.v1.1 MD17G1219800.v1.1
prunus_persica	Prupe.3G095300_v2.0.a1
pyrus_communis	pycom12419g00120 pycom17g22460
rosa_chinensis	RchiOBHm_Chr2g0133511 RchiOBHm_Chr2g0145231 RchiOBHm_Chr2g0171141 RchiOBHm_Chr4g0407691 RchiOBHm_Chr6g0246971
rosa_laevigata	RLG00000008702 RLG00000019349
rosa_multiflora	Rmu_sc0000882.1_g000047 Rmu_sc0001513.1_g000005 Rmu_sc0003573.1_g000004 Rmu_sc0004565.1_g000003 Rmu_sc0016639.1_g000001 Rmu_sc0017323.1_g000001 Rmu_sc0017417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080760 Rroxscaffold_2G00111010 Rroxscaffold_5G00352280
rosa_rugosa	Rorug02G0312500 Rorug04G0081200
rosa_samantha	Rh1AG075500 Rh1AG075600 Rh2AG627400 Rh2BG371000 Rh2BG461000 Rh2CG348600 Rh2CG493000 Rh2CG606200 Rh2CG606700 Rh2DG387800 Rh2DG654800 Rh4BG143600 Rh4BG253200 Rh4CG017900 Rh4CG152500 Rh5CG250900 Rh7CG300100 Rh7CG395600
rosa_wichuraiana	Rw1G003050 Rw2G029760 Rw2G051930 Rw2G051980 Rw4G002550 Rw4G011860 Rw6G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	92, 173
AluBI	AGCT	3 cut(s)	19, 31, 199
AluI	AGCT	3 cut(s)	19, 31, 199
Alw26I	GTCTC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	266
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	130, 268
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	202
BsgI	GTGCAG	2 cut(s)	66, 203
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	2 cut(s)	242, 281
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	2 cut(s)	242, 281
BsmI	GAATGC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	292
CviJI	RGCY	3 cut(s)	19, 31, 199
CviKI_1	RGCY	3 cut(s)	19, 31, 199
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DraI	TTTAAA	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	114
FaqI	GGGAC	2 cut(s)	242, 281
HapII	CCGG	1 cut(s)	265
HinfI	GANTC	2 cut(s)	65, 230
HpaII	CCGG	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	64, 70, 215
HpyCH4V	TGCA	3 cut(s)	11, 83, 184
HpyF3I	CTNAG	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	3 cut(s)	211, 278, 288
LweI	GCATC	2 cut(s)	130, 268
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	3 cut(s)	120, 161, 228
MluCI	AATT	3 cut(s)	24, 50, 310
MlyI	GAGTC	2 cut(s)	74, 224
MnlI	CCTC	2 cut(s)	180, 183
MseI	TTAA	2 cut(s)	54, 203
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	154
PfoI	TCCNGGA	1 cut(s)	264
PleI	GAGTC	2 cut(s)	73, 224
PpsI	GAGTC	2 cut(s)	73, 224
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	54, 203
Sau3AI	GATC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	74, 224
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	3 cut(s)	21, 33, 201
SfaNI	GCATC	2 cut(s)	130, 268
SfcI	CTRYAG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	24, 50, 310
StyD4I	CCNGG	1 cut(s)	264
TasI	AATT	3 cut(s)	24, 50, 310
TatI	WGTACW	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	54, 203
Tru9I	TTAA	2 cut(s)	54, 203
TspDTI	ATGAA	1 cut(s)	63
XapI	RAATTY	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.