AT2G29590

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000478
Physical Location & Seq
Reverse (-)
12654456 .. 12655457
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29590.1

Sequence Viewer

Length: 477 bp
ATGATGGAGAAAATTATGGAGTATCTGCAATTGAGCGATGAGGTGGTTGACGACGGTGAGGCACCGCGAGTTGAAGAATTTTTAGGTGAAGGGAAAAGCTTCTACGAGAATTTTAGTCTCAGAGGAATCCGAGTCAACCGAGTCGAACCGGGTTTCATTTCCTGCTCTTTCAAGGTTCCTCTTCGTTTGACGGACAGAGACAAGAATTTAGCAAATGGTGCGATTGCAAATCTTGTGGATGAAGTTGGTGGAGCACTTGTACATGGCGAAGGCTTACCTATGAGTGTTTCAGTGGACATGTCTATTGCATTCCTTTCAAAAGCTAAGCTTGGTGAGGAGTTGGAGATAACGTCGAGATTGTTAGGAGAGAGAGGAGGTTATAAAGGAACAATCGTTGTAGTCAGAAACAAGATGACCGGGGAGATTATAGCGGAAGGTCGACATTCTATGTTTGGTAGACAAGCTAGTAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

158

Amino Acids

17.37

Weight (kDa)

5.32

Isoelectric Point (pI)

24.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 70 - 120 1.5e-07 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 61
AccI GTMKAC 2 cut(s) 439, 457
AccII CGCG 1 cut(s) 67
AciI CCGC 2 cut(s) 65, 431
AcsI RAATTY 3 cut(s) 77, 109, 205
AfaI GTAC 1 cut(s) 261
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 3 cut(s) 74, 172, 318
AluBI AGCT 5 cut(s) 99, 323, 328, 464, 472
AluI AGCT 5 cut(s) 99, 323, 328, 464, 472
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 122, 192
ApoI RAATTY 3 cut(s) 77, 109, 205
Asp700I GAANNNNTTC 1 cut(s) 98
AsuC2I CCSGG 2 cut(s) 150, 418
AsuHPI GGTGA 3 cut(s) 68, 98, 344
BanI GGYRCC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 256
BcnI CCSGG 2 cut(s) 150, 418
BcoDI GTCTC 2 cut(s) 122, 192
BfaI CTAG 1 cut(s) 465
BlpI GCTNAGC 1 cut(s) 324
Bme1390I CCNGG 2 cut(s) 150, 418
BmiI GGNNCC 2 cut(s) 63, 177
BmrFI CCNGG 2 cut(s) 150, 418
Bpu1102I GCTNAGC 1 cut(s) 324
BpuMI CCSGG 2 cut(s) 150, 418
BsaJI CCNNGG 1 cut(s) 417
BsaXI ACNNNNNCTCC 4 cut(s) 243, 273, 335, 365
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 350, 387
Bsh1236I CGCG 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 149, 417
BsmAI GTCTC 2 cut(s) 122, 192
BsmI GAATGC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 259
Bsp1720I GCTNAGC 1 cut(s) 324
BspACI CCGC 2 cut(s) 65, 431
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 63, 177
BspT107I GGYRCC 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 119, 324
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 67
BstMAI GTCTC 2 cut(s) 122, 192
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 148, 416
BstUI CGCG 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 297
Csp6I GTAC 1 cut(s) 260
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 2 cut(s) 263, 298
CviJI RGCY 6 cut(s) 99, 273, 323, 328, 464, 472
CviKI_1 RGCY 6 cut(s) 99, 273, 323, 328, 464, 472
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 2 cut(s) 119, 324
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
FaeI CATG 2 cut(s) 266, 301
FaiI YATR 7 cut(s) 17, 264, 281, 299, 381, 428, 449
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 2 cut(s) 262, 297
FblI GTMKAC 2 cut(s) 439, 457
FokI GGATG 1 cut(s) 251
FspBI CTAG 1 cut(s) 465
HapII CCGG 2 cut(s) 149, 417
Hin1II CATG 2 cut(s) 266, 301
HincII GTYRAC 3 cut(s) 49, 136, 440
HindII GTYRAC 3 cut(s) 49, 136, 440
HindIII AAGCTT 2 cut(s) 97, 326
HinfI GANTC 3 cut(s) 126, 132, 141
HpaII CCGG 2 cut(s) 149, 417
HphI GGTGA 3 cut(s) 68, 98, 344
Hpy166II GTNNAC 5 cut(s) 49, 136, 295, 440, 458
Hpy188I TCNGA 4 cut(s) 122, 131, 404, 476
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 5 cut(s) 49, 136, 295, 440, 458
Hpy99I CGWCG 2 cut(s) 56, 355
HpyAV CCTTC 3 cut(s) 83, 263, 428
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 3 cut(s) 28, 227, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 119, 324
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 2 cut(s) 266, 301
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 3 cut(s) 162, 175, 430
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 350
MboII GAAGA 2 cut(s) 86, 173
MfeI CAATTG 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 5 cut(s) 12, 29, 77, 109, 205
MlyI GAGTC 2 cut(s) 141, 150
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 7 cut(s) 34, 52, 116, 189, 328, 365, 368
MroXI GAANNNNTTC 1 cut(s) 98
MspI CCGG 2 cut(s) 149, 417
MspR9I CCNGG 2 cut(s) 150, 418
MunI CAATTG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 308
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 2 cut(s) 150, 418
NlaIII CATG 2 cut(s) 266, 301
NlaIV GGNNCC 2 cut(s) 63, 177
NspI RCATGY 1 cut(s) 301
PciI ACATGT 1 cut(s) 297
PctI GAATGC 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 126
PleI GAGTC 2 cut(s) 140, 149
PpsI GAGTC 2 cut(s) 140, 149
PscI ACATGT 1 cut(s) 297
PsiI TTATAA 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 63, 177
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SalI GTCGAC 1 cut(s) 438
SchI GAGTC 2 cut(s) 141, 150
ScrFI CCNGG 2 cut(s) 150, 418
SduI GDGCHC 1 cut(s) 256
Sse9I AATT 5 cut(s) 12, 29, 77, 109, 205
SsiI CCGC 2 cut(s) 65, 431
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 148, 416
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 353
TaqI TCGA 3 cut(s) 144, 353, 439
TasI AATT 5 cut(s) 12, 29, 77, 109, 205
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 1 cut(s) 126
TscAI CASTG 1 cut(s) 297
TspDTI ATGAA 2 cut(s) 145, 255
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 297
XapI RAATTY 3 cut(s) 77, 109, 205
XceI RCATGY 1 cut(s) 301
XmiI GTMKAC 2 cut(s) 439, 457
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.