pycom03g06130

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000478
Physical Location & Seq
Forward (+)
4863252 .. 4864406
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g06130.2

Sequence Viewer

Length: 483 bp
ATGGAGAAGGCGAAGAAGTGTCTGGAGCTGAACTCGGACGAGTCAGAGACCGTGTCGCGAGTCGCCATCCCAGCTCTCCAAATCGGAAAGTCCAGCTTCTACGAAGCCTTTGCTCTGAGAGGTATCCTAGTCGAGCGAGTCGAACCCGGTGTCGTCCTCTGTTCTTTCAAGGTCCCTCCCCGCCTTGTCGATAGAGATGGAAAATTGGCAAATGGTGCAATTGCAAATCTCGTTGATATAGTTGGTGCCTCCGTAGCTTATATTCCGGGTCTCCCTATGAATGTTTCTGTCGACATATCGGTCTCTTATGTGTCGACTGCCAAGCTTCATGACGAGCTAGAGATAACTTCAAGGGTTTTAGGACGAACAGGCGGTTACTGTGGAACGATGGTAATTTTCAGAAATAAAGCAACGGGAGAGATAATAGCTGAAGGTCGACATTCATTGTTTCGTTCAAAAGCTGGTCCCGTTTCCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

161

Amino Acids

17.15

Weight (kDa)

8.81

Isoelectric Point (pI)

24.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 245
AccI GTMKAC 3 cut(s) 291, 314, 436
AccII CGCG 1 cut(s) 58
AciI CCGC 2 cut(s) 181, 372
AcuI CTGAAG 1 cut(s) 450
AgsI TTSAA 3 cut(s) 169, 351, 456
AluBI AGCT 8 cut(s) 28, 74, 96, 257, 325, 337, 428, 461
AluI AGCT 8 cut(s) 28, 74, 96, 257, 325, 337, 428, 461
Alw26I GTCTC 3 cut(s) 41, 275, 307
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspS9I GGNCC 2 cut(s) 172, 464
AsuC2I CCSGG 2 cut(s) 147, 267
AvaII GGWCC 2 cut(s) 172, 464
BanI GGYRCC 1 cut(s) 245
BccI CCATC 3 cut(s) 74, 191, 382
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciVI GTATCC 1 cut(s) 134
BcnI CCSGG 2 cut(s) 147, 267
BcoDI GTCTC 3 cut(s) 41, 275, 307
BfaI CTAG 2 cut(s) 128, 338
BfuI GTATCC 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 147, 267
Bme18I GGWCC 2 cut(s) 172, 464
BmgT120I GGNCC 2 cut(s) 172, 464
BmiI GGNNCC 3 cut(s) 174, 247, 466
BmrFI CCNGG 2 cut(s) 147, 267
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 147, 267
BsaI GGTCTC 3 cut(s) 41, 275, 307
BseGI GGATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 58
BshNI GGYRCC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 147, 266
BslFI GGGAC 2 cut(s) 158, 450
BsmAI GTCTC 3 cut(s) 41, 275, 307
BsmFI GGGAC 2 cut(s) 158, 450
Bso31I GGTCTC 3 cut(s) 41, 275, 307
Bsp68I TCGCGA 1 cut(s) 58
BspACI CCGC 2 cut(s) 181, 372
BspCNI CTCAG 1 cut(s) 108
BspFNI CGCG 1 cut(s) 58
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 3 cut(s) 174, 247, 466
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 3 cut(s) 41, 275, 307
Bst4CI ACNGT 2 cut(s) 52, 380
BstAPI GCANNNNNTGC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 58
BstMAI GTCTC 3 cut(s) 41, 275, 307
BstMWI GCNNNNNNNGC 3 cut(s) 71, 215, 254
BstSCI CCNGG 2 cut(s) 145, 265
BstUI CGCG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 66
BtuMI TCGCGA 1 cut(s) 58
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 172, 464
CviAII CATG 1 cut(s) 329
CviJI RGCY 9 cut(s) 28, 74, 96, 107, 257, 325, 337, 428, 461
CviKI_1 RGCY 9 cut(s) 28, 74, 96, 107, 257, 325, 337, 428, 461
DdeI CTNAG 1 cut(s) 116
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eco31I GGTCTC 3 cut(s) 41, 275, 307
Eco47I GGWCC 2 cut(s) 172, 464
Eco57I CTGAAG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 172
FaeI CATG 1 cut(s) 332
FaiI YATR 6 cut(s) 239, 261, 278, 296, 309, 330
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 2 cut(s) 158, 450
FatI CATG 1 cut(s) 328
FauI CCCGC 1 cut(s) 188
FblI GTMKAC 3 cut(s) 291, 314, 436
FokI GGATG 1 cut(s) 53
FspBI CTAG 2 cut(s) 128, 338
GsaI CCCAGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 44
HapII CCGG 2 cut(s) 147, 266
Hin1II CATG 1 cut(s) 332
HincII GTYRAC 3 cut(s) 292, 315, 437
HindII GTYRAC 3 cut(s) 292, 315, 437
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 3 cut(s) 41, 60, 138
HpaII CCGG 2 cut(s) 147, 266
Hpy166II GTNNAC 3 cut(s) 292, 315, 437
Hpy188I TCNGA 5 cut(s) 37, 46, 86, 117, 401
Hpy188III TCNNGA 3 cut(s) 23, 57, 329
Hpy8I GTNNAC 3 cut(s) 292, 315, 437
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 2 cut(s) 52, 380
HpyCH4V TGCA 2 cut(s) 218, 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 215, 254
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 1 cut(s) 332
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 7 cut(s) 8, 84, 106, 160, 279, 354, 447
MaeI CTAG 2 cut(s) 128, 338
MaeIII GTNAC 1 cut(s) 374
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 219
MluCI AATT 3 cut(s) 203, 219, 393
MlyI GAGTC 3 cut(s) 50, 69, 147
MnlI CCTC 4 cut(s) 113, 167, 186, 259
MspI CCGG 2 cut(s) 147, 266
MspR9I CCNGG 2 cut(s) 147, 267
MunI CAATTG 1 cut(s) 219
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 3 cut(s) 71, 215, 254
NciI CCSGG 2 cut(s) 147, 267
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 3 cut(s) 174, 247, 466
NruI TCGCGA 1 cut(s) 58
PagI TCATGA 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 52
PleI GAGTC 3 cut(s) 49, 68, 146
PpsI GAGTC 3 cut(s) 49, 68, 146
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 174, 247, 466
PspPI GGNCC 2 cut(s) 172, 464
PspPPI RGGWCCY 1 cut(s) 172
PsyI GACNNNGTC 1 cut(s) 52
RruI TCGCGA 1 cut(s) 58
SalI GTCGAC 3 cut(s) 290, 313, 435
Sau96I GGNCC 2 cut(s) 172, 464
SchI GAGTC 3 cut(s) 50, 69, 147
ScrFI CCNGG 2 cut(s) 147, 267
SinI GGWCC 2 cut(s) 172, 464
Sse9I AATT 3 cut(s) 203, 219, 393
SsiI CCGC 2 cut(s) 181, 372
SspMI CTAG 2 cut(s) 128, 338
StyD4I CCNGG 2 cut(s) 145, 265
TaaI ACNGT 2 cut(s) 52, 380
TaqI TCGA 6 cut(s) 132, 141, 189, 291, 314, 436
TaqII GACCGA 1 cut(s) 289
TasI AATT 3 cut(s) 203, 219, 393
TspDTI ATGAA 3 cut(s) 293, 317, 432
TspGWI ACGGA 1 cut(s) 241
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 172, 464
XmiI GTMKAC 3 cut(s) 291, 314, 436
XspI CTAG 2 cut(s) 128, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.