Rh5CG487800

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000478
Physical Location & Seq
Reverse (-)
67992779 .. 67994976
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG487800.1

Sequence Viewer

Length: 396 bp
ATGGAGAAGAAGGTGAAGGAGTTTCTGGAGCTGAGCCAGGACGAGTCAGAGGCCGTGTCACGAATCGTTGTTCCACCCCAGCGACCAGGCACCGCGAGTTTGTACGAGGATTTCGCTCTCAGAAGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTCTGTACGCTCAAGGTTCCTCCCCGCCTCACCGATAGAGCTGGAAATTTGGCTAAAGGTGCCATTGCAAATGTTGTTGATATGGTTGGTGGTTATGTAACTTATGTTGAGGGTCTCCCAATGTATGTTTCAGTAGACATATCGATCTCCTATATATCAACTGCAAAGCTTGATGTAAGCAACTCTCAATTATTTGACATTTACGCGGTGATTCTTAGCAGCCAGCCTTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

131

Amino Acids

14.33

Weight (kDa)

4.92

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 89, 218
AccI GTMKAC 2 cut(s) 135, 294
AccII CGCG 2 cut(s) 95, 365
AciI CCGC 3 cut(s) 93, 184, 365
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 2 cut(s) 104, 166
AgsI TTSAA 1 cut(s) 391
AhdI GACNNNNNGTC 1 cut(s) 158
AjnI CCWGG 2 cut(s) 36, 85
AjuI GAANNNNNNNTTGG 2 cut(s) 271, 303
AluBI AGCT 3 cut(s) 31, 200, 328
AluI AGCT 3 cut(s) 31, 200, 328
Alw26I GTCTC 1 cut(s) 278
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 25, 181, 379
BanI GGYRCC 2 cut(s) 89, 218
BbvI GCAGC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 38, 87
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 278
BisI GCNGC 1 cut(s) 379
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 380
Bme1390I CCNGG 3 cut(s) 38, 87, 150
BmeRI GACNNNNNGTC 1 cut(s) 158
BmiI GGNNCC 3 cut(s) 91, 177, 220
BmrFI CCNGG 3 cut(s) 38, 87, 150
BmsI GCATC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 47
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 38, 87
BseCI ATCGAT 1 cut(s) 302
BseGI GGATG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 23, 133
BseXI GCAGC 1 cut(s) 390
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 2 cut(s) 95, 365
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 2 cut(s) 89, 218
BshVI ATCGAT 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 303
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 3 cut(s) 93, 184, 365
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 2 cut(s) 24, 132
BspDI ATCGAT 1 cut(s) 302
BspFNI CGCG 2 cut(s) 95, 365
BspLI GGNNCC 3 cut(s) 91, 177, 220
BspT107I GGYRCC 2 cut(s) 89, 218
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 222
BssMI GATC 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 38, 87
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 3 cut(s) 32, 119, 374
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 2 cut(s) 95, 365
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 1 cut(s) 303
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 2 cut(s) 38, 87
BstSCI CCNGG 3 cut(s) 36, 85, 148
BstUI CGCG 2 cut(s) 95, 365
BstV1I GCAGC 1 cut(s) 390
Bsu15I ATCGAT 1 cut(s) 302
BsuRI GGCC 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 302
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 383
ClaI ATCGAT 1 cut(s) 302
Csp6I GTAC 2 cut(s) 103, 165
CviJI RGCY 8 cut(s) 31, 36, 53, 200, 212, 328, 381, 385
CviKI_1 RGCY 8 cut(s) 31, 36, 53, 200, 212, 328, 381, 385
CviQI GTAC 2 cut(s) 103, 165
DdeI CTNAG 3 cut(s) 32, 119, 374
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
DriI GACNNNNNGTC 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 278
EcoRII CCWGG 2 cut(s) 36, 85
FaiI YATR 7 cut(s) 242, 255, 264, 285, 299, 312, 314
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 2 cut(s) 135, 294
Fnu4HI GCNGC 1 cut(s) 379
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 379
GluI GCNGC 1 cut(s) 379
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 150
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 6 cut(s) 44, 63, 132, 141, 153, 370
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 25, 181, 379
Hpy166II GTNNAC 2 cut(s) 136, 295
Hpy188I TCNGA 3 cut(s) 49, 122, 131
Hpy188III TCNNGA 2 cut(s) 26, 60
Hpy8I GTNNAC 2 cut(s) 136, 295
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 4, 10
HpyCH4V TGCA 2 cut(s) 227, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 3 cut(s) 32, 119, 374
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 8 cut(s) 11, 23, 50, 72, 92, 99, 163, 186
Lsp1109I GCAGC 1 cut(s) 390
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 57, 256
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 1 cut(s) 19
MluCI AATT 3 cut(s) 205, 347, 391
MlyI GAGTC 4 cut(s) 53, 141, 147, 150
MnlI CCTC 5 cut(s) 43, 100, 189, 197, 262
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 38, 87, 150
MvaI CCWGG 2 cut(s) 38, 87
MvnI CGCG 2 cut(s) 95, 365
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 150
NdeII GATC 1 cut(s) 303
NlaIV GGNNCC 3 cut(s) 91, 177, 220
NmuCI GTSAC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 2 cut(s) 63, 370
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 380
PleI GAGTC 4 cut(s) 52, 140, 147, 149
PpsI GAGTC 4 cut(s) 52, 140, 147, 149
Psp6I CCWGG 2 cut(s) 36, 85
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 2 cut(s) 36, 85
PspN4I GGNNCC 3 cut(s) 91, 177, 220
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 2 cut(s) 104, 166
RsaNI GTAC 2 cut(s) 103, 165
SalI GTCGAC 1 cut(s) 134
SatI GCNGC 1 cut(s) 379
Sau3AI GATC 1 cut(s) 303
SchI GAGTC 4 cut(s) 53, 141, 147, 150
ScrFI CCNGG 3 cut(s) 38, 87, 150
SetI ASST 6 cut(s) 15, 33, 177, 202, 220, 330
SfaNI GCATC 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 3 cut(s) 205, 347, 391
SsiI CCGC 3 cut(s) 93, 184, 365
StyD4I CCNGG 3 cut(s) 36, 85, 148
TaqI TCGA 3 cut(s) 135, 144, 302
TaqII GACCGA 1 cut(s) 153
TasI AATT 3 cut(s) 205, 347, 391
TfiI GAWTC 2 cut(s) 63, 370
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 1 cut(s) 378
Tsp45I GTSAC 1 cut(s) 57
Tth111I GACNNNGTC 1 cut(s) 140
XapI RAATTY 1 cut(s) 205
XmiI GTMKAC 2 cut(s) 135, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.