FvH4_3g37990

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000478
Physical Location & Seq
Reverse (-)
32529285 .. 32531134
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37990.t1

Sequence Viewer

Length: 507 bp
ATGTGTTCGGTTGGAGAAGACAAGAAAGTGAAAATGGAGAAGAAGGTGATGGAGTGTCTGGAGCTGAGTCAGGACGAGTCAGAGGCCGTGTCGAGAGTCGTGGTTCCGGCTCAGCGGCCCGGCGAGGCGAGCATATACGATATCTTCTCTCTTAGAGGCATCCGGGTCGACTGGGCCGAACCGGGACTCGTCGTCTGTACTCTCAAGGTCCCTCCCCGCCTCACCGATAGAGCTGGACACTTGTCCCAAGGTGCAATTGCGAACCTGGTTGATGTAGTTGGTGCTTCTGTAGCATATATTAACGGTCTCCCTATGAATGTTTCAGTAGACATATCCATCTCCTACATGTCAAAGGCAAAGCTTGATGATGAGTTAGAGATTACCTCAAAAAGGTTAGGACAAAGAGGAAGTTATTCTGGAGTAGTAGTGCTTCTGAGAAACAAAGCAACTGGAGAGGTTGTTGCTGAAGGTCGACATTCAATGTTTCGTCCTGCTGCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

169

Amino Acids

18.2

Weight (kDa)

7.69

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 79 - 147 6.3e-07 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 168, 327, 472
AciI CCGC 2 cut(s) 115, 217
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 390
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 1 cut(s) 480
AhdI GACNNNNNGTC 1 cut(s) 191
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 3 cut(s) 64, 233, 361
AluI AGCT 3 cut(s) 64, 233, 361
Alw26I GTCTC 1 cut(s) 311
AoxI GGCC 3 cut(s) 84, 116, 174
ApeKI GCWGC 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 412
AspS9I GGNCC 3 cut(s) 117, 174, 208
AsuC2I CCSGG 3 cut(s) 120, 164, 183
AsuHPI GGTGA 2 cut(s) 58, 214
AvaII GGWCC 1 cut(s) 208
BarI GAAGNNNNNNTAC 2 cut(s) 414, 446
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 481
BccI CCATC 2 cut(s) 43, 344
BceAI ACGGC 1 cut(s) 71
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 3 cut(s) 120, 164, 183
BcoDI GTCTC 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 2 cut(s) 116, 495
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 2 cut(s) 117, 496
Bme1390I CCNGG 4 cut(s) 120, 164, 183, 266
Bme18I GGWCC 1 cut(s) 208
BmeRI GACNNNNNGTC 1 cut(s) 191
BmgT120I GGNCC 3 cut(s) 117, 174, 208
BmiI GGNNCC 2 cut(s) 105, 210
BmrFI CCNGG 4 cut(s) 120, 164, 183, 266
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 181
BoxI GACNNNNGTC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BpmI CTGGAG 3 cut(s) 80, 438, 471
Bpu1102I GCTNAGC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 3 cut(s) 120, 164, 183
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 247
BsaXI ACNNNNNCTCC 4 cut(s) 411, 441, 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse1I ACTGG 2 cut(s) 176, 454
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMII CTCAG 3 cut(s) 56, 125, 425
BseNI ACTGG 2 cut(s) 176, 454
BseXI GCAGC 1 cut(s) 481
BshFI GGCC 3 cut(s) 86, 118, 176
BsiSI CCGG 4 cut(s) 107, 120, 163, 182
BslFI GGGAC 3 cut(s) 194, 198, 229
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 3 cut(s) 194, 198, 229
BsnI GGCC 3 cut(s) 86, 118, 176
Bso31I GGTCTC 1 cut(s) 311
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 2 cut(s) 115, 217
BspANI GGCC 3 cut(s) 86, 118, 176
BspCNI CTCAG 3 cut(s) 57, 124, 426
BspLI GGNNCC 2 cut(s) 105, 210
BspTNI GGTCTC 1 cut(s) 311
BsrI ACTGG 2 cut(s) 176, 454
BssECI CCNNGG 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 4 cut(s) 65, 111, 152, 434
BstENI CCTNNNNNAGG 1 cut(s) 388
BstF5I GGATG 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 311
BstMWI GCNNNNNNNGC 2 cut(s) 129, 290
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 349
BstPAI GACNNNNGTC 1 cut(s) 241
BstSCI CCNGG 4 cut(s) 118, 162, 181, 264
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 481
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 3 cut(s) 86, 118, 176
BtsCI GGATG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 130
Cfr13I GGNCC 3 cut(s) 117, 174, 208
CsiI ACCWGGT 1 cut(s) 264
Csp6I GTAC 1 cut(s) 198
CviAII CATG 1 cut(s) 346
CviJI RGCY 7 cut(s) 64, 86, 110, 118, 176, 233, 361
CviKI_1 RGCY 7 cut(s) 64, 86, 110, 118, 176, 233, 361
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 4 cut(s) 65, 111, 152, 434
DriI GACNNNNNGTC 1 cut(s) 191
Eam1105I GACNNNNNGTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 311
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 486
EcoNI CCTNNNNNAGG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 264
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 1 cut(s) 349
FaiI YATR 7 cut(s) 134, 136, 295, 297, 314, 332, 347
FaqI GGGAC 3 cut(s) 194, 198, 229
FatI CATG 1 cut(s) 345
FauI CCCGC 1 cut(s) 224
FblI GTMKAC 3 cut(s) 168, 327, 472
Fnu4HI GCNGC 2 cut(s) 116, 495
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 116, 495
GluI GCNGC 2 cut(s) 116, 495
GsuI CTGGAG 3 cut(s) 80, 438, 471
HaeIII GGCC 3 cut(s) 86, 118, 176
HapII CCGG 4 cut(s) 107, 120, 163, 182
Hin1II CATG 1 cut(s) 349
HincII GTYRAC 2 cut(s) 169, 473
HindII GTYRAC 2 cut(s) 169, 473
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 4 cut(s) 67, 77, 96, 186
HpaII CCGG 4 cut(s) 107, 120, 163, 182
HphI GGTGA 2 cut(s) 58, 214
Hpy166II GTNNAC 3 cut(s) 169, 328, 473
Hpy188I TCNGA 3 cut(s) 82, 435, 506
Hpy188III TCNNGA 4 cut(s) 59, 71, 93, 417
Hpy8I GTNNAC 3 cut(s) 169, 328, 473
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 37, 461
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 290
HpyF3I CTNAG 4 cut(s) 65, 111, 152, 434
Hsp92II CATG 1 cut(s) 349
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 168
MabI ACCWGGT 1 cut(s) 264
MboII GAAGA 3 cut(s) 29, 52, 136
MfeI CAATTG 1 cut(s) 255
MluCI AATT 1 cut(s) 255
MlyI GAGTC 4 cut(s) 76, 86, 105, 180
MnlI CCTC 8 cut(s) 76, 118, 149, 222, 230, 394, 398, 448
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 4 cut(s) 107, 120, 163, 182
MspR9I CCNGG 4 cut(s) 120, 164, 183, 266
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 129, 290
NciI CCSGG 3 cut(s) 120, 164, 183
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 2 cut(s) 105, 210
NspI RCATGY 1 cut(s) 349
PciI ACATGT 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 412
PkrI GCNGC 2 cut(s) 117, 496
PleI GAGTC 4 cut(s) 75, 85, 104, 180
PpsI GAGTC 4 cut(s) 75, 85, 104, 180
PpuMI RGGWCCY 1 cut(s) 208
PscI ACATGT 1 cut(s) 345
PshAI GACNNNNGTC 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 105, 210
PspPI GGNCC 3 cut(s) 117, 174, 208
PspPPI RGGWCCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SalI GTCGAC 2 cut(s) 167, 471
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 116, 495
Sau96I GGNCC 3 cut(s) 117, 174, 208
SchI GAGTC 4 cut(s) 76, 86, 105, 180
ScrFI CCNGG 4 cut(s) 120, 164, 183, 266
SexAI ACCWGGT 1 cut(s) 264
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 255
SsiI CCGC 2 cut(s) 115, 217
StyD4I CCNGG 4 cut(s) 118, 162, 181, 264
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 3 cut(s) 92, 168, 472
TasI AATT 1 cut(s) 255
TatI WGTACW 1 cut(s) 197
TauI GCSGC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 208
XagI CCTNNNNNAGG 1 cut(s) 388
XceI RCATGY 1 cut(s) 349
XmiI GTMKAC 3 cut(s) 168, 327, 472
XmnI GAANNNNTTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.