Rh5BG466300

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000478
Physical Location & Seq
Reverse (-)
74295261 .. 74296968
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG466300.1

Sequence Viewer

Length: 510 bp
ATGGCTCCGATTGGAGGAGAAGACGAGGACGTGAATATGAAAAAGAAGGCGAAAGAGTCTCTGGAGCTGAGCCAGGACGAGTCAGAGGCCGTGTCGCGAATCGTCGTACCGGCTCAGCGACCCGGCGAGTCGAGCATATACGATATGTTCTCTCTTAGAGGCATCCGAGTCGACCGAGCCCTACCCGGACTCGTCGTCTGTACTCTTAAGGTCCCTCCCCGCCTCACTGATAGAGCTGGAAATTTGGCCCAAGGCGCAATTGCAAACCTTGTTGATGTAGTTGGTGCTTCTGTAGCATATATTCACGGTCTCCCTATGAATGTTTCCGTAGACATATCTGTCTCCTACATGTCAAAGGCAAAGCTTGATGATGAGTTAGAGATCACCTCTCAAAGGTTAGGACGAAAAGGAGGATATTCTGGAGCAATAGTGATTCTGAGAAACAAAGCAACTGGAGAGGTTGTTGCTGAAGGTCGACATTCAATGTTTCGTCCTGCTGCTAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

169

Amino Acids

18.1

Weight (kDa)

7.84

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 80 - 130 5e-06 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccI GTMKAC 3 cut(s) 171, 330, 475
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 489
AfaI GTAC 2 cut(s) 108, 202
AfiI CCNNNNNNNGG 2 cut(s) 14, 393
AflII CTTAAG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 1 cut(s) 483
AhdI GACNNNNNGTC 1 cut(s) 194
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 3 cut(s) 67, 236, 364
AluI AGCT 3 cut(s) 67, 236, 364
Alw26I GTCTC 3 cut(s) 63, 314, 346
AoxI GGCC 2 cut(s) 87, 246
ApeKI GCWGC 1 cut(s) 497
ApoI RAATTY 1 cut(s) 241
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 211, 247
AsuC2I CCSGG 2 cut(s) 123, 186
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 484
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 2 cut(s) 123, 186
BcoDI GTCTC 3 cut(s) 63, 314, 346
BfmI CTRYAG 1 cut(s) 291
BfrI CTTAAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 498
BlpI GCTNAGC 2 cut(s) 68, 114
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 3 cut(s) 74, 123, 186
Bme18I GGWCC 1 cut(s) 211
BmeRI GACNNNNNGTC 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 211, 247
BmiI GGNNCC 2 cut(s) 6, 213
BmrFI CCNGG 3 cut(s) 74, 123, 186
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 3 cut(s) 83, 441, 474
Bpu1102I GCTNAGC 2 cut(s) 68, 114
BpuMI CCSGG 2 cut(s) 123, 186
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 4 cut(s) 414, 444, 447, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 393
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 14, 393
BseMII CTCAG 3 cut(s) 59, 128, 428
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 484
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 2 cut(s) 89, 248
BsiEI CGRYCG 1 cut(s) 175
BsiSI CCGG 3 cut(s) 110, 123, 186
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 14, 393
BsmAI GTCTC 3 cut(s) 63, 314, 346
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 2 cut(s) 89, 248
Bso31I GGTCTC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 381
Bsp1720I GCTNAGC 2 cut(s) 68, 114
Bsp68I TCGCGA 1 cut(s) 97
BspACI CCGC 1 cut(s) 220
BspANI GGCC 2 cut(s) 89, 248
BspCNI CTCAG 3 cut(s) 60, 127, 429
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 6, 213
BspTI CTTAAG 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 308
BstAFI CTTAAG 1 cut(s) 206
BstDEI CTNAG 4 cut(s) 68, 114, 155, 437
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 3 cut(s) 63, 314, 346
BstMBI GATC 1 cut(s) 381
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 132, 254, 293
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 3 cut(s) 72, 121, 184
BstSFI CTRYAG 1 cut(s) 291
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 484
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 2 cut(s) 89, 248
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 225
BtuMI TCGCGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 211, 247
Csp6I GTAC 2 cut(s) 107, 201
CviAII CATG 1 cut(s) 349
CviJI RGCY 9 cut(s) 5, 67, 72, 89, 113, 179, 236, 248, 364
CviKI_1 RGCY 9 cut(s) 5, 67, 72, 89, 113, 179, 236, 248, 364
CviQI GTAC 2 cut(s) 107, 201
DdeI CTNAG 4 cut(s) 68, 114, 155, 437
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
DrdI GACNNNNNNGTC 1 cut(s) 338
DriI GACNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 338
Eam1105I GACNNNNNGTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 489
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 352
FaiI YATR 9 cut(s) 38, 137, 139, 146, 298, 300, 317, 335, 350
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 348
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 3 cut(s) 171, 330, 475
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 498
GlaI GCGC 1 cut(s) 256
GluI GCNGC 1 cut(s) 498
GsuI CTGGAG 3 cut(s) 83, 441, 474
HaeIII GGCC 2 cut(s) 89, 248
HapII CCGG 3 cut(s) 110, 123, 186
HhaI GCGC 1 cut(s) 257
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 2 cut(s) 172, 476
HindII GTYRAC 2 cut(s) 172, 476
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 7 cut(s) 56, 80, 99, 128, 168, 189, 433
HpaII CCGG 3 cut(s) 110, 123, 186
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 3 cut(s) 172, 331, 476
Hpy188I TCNGA 5 cut(s) 9, 85, 167, 438, 509
Hpy188III TCNNGA 3 cut(s) 62, 96, 420
Hpy8I GTNNAC 3 cut(s) 172, 331, 476
Hpy99I CGWCG 2 cut(s) 107, 197
HpyAV CCTTC 2 cut(s) 40, 464
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 254, 293
HpyF3I CTNAG 4 cut(s) 68, 114, 155, 437
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 381
LmnI GCTCC 3 cut(s) 10, 64, 422
LpnPI CCDG 9 cut(s) 47, 59, 86, 123, 136, 199, 222, 405, 438
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 1 cut(s) 171
MaeII ACGT 1 cut(s) 30
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 2 cut(s) 241, 258
MlyI GAGTC 5 cut(s) 65, 89, 137, 177, 183
MnlI CCTC 9 cut(s) 8, 19, 79, 152, 225, 233, 397, 404, 451
MseI TTAA 1 cut(s) 207
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 3 cut(s) 110, 123, 186
MspR9I CCNGG 3 cut(s) 74, 123, 186
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 3 cut(s) 132, 254, 293
NciI CCSGG 2 cut(s) 123, 186
NdeII GATC 1 cut(s) 381
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 2 cut(s) 6, 213
NruI TCGCGA 1 cut(s) 97
NspI RCATGY 1 cut(s) 352
PciI ACATGT 1 cut(s) 348
PfeI GAWTC 2 cut(s) 99, 433
PkrI GCNGC 1 cut(s) 499
PleI GAGTC 5 cut(s) 64, 88, 136, 176, 183
PpsI GAGTC 5 cut(s) 64, 88, 136, 176, 183
PpuMI RGGWCCY 1 cut(s) 211
PscI ACATGT 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 6, 213
PspPI GGNCC 2 cut(s) 211, 247
PspPPI RGGWCCY 1 cut(s) 211
RruI TCGCGA 1 cut(s) 97
RsaI GTAC 2 cut(s) 108, 202
RsaNI GTAC 2 cut(s) 107, 201
SalI GTCGAC 2 cut(s) 170, 474
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 2 cut(s) 211, 247
SchI GAGTC 5 cut(s) 65, 89, 137, 177, 183
ScrFI CCNGG 3 cut(s) 74, 123, 186
SduI GDGCHC 1 cut(s) 181
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 241, 258
SsiI CCGC 1 cut(s) 220
StyD4I CCNGG 3 cut(s) 72, 121, 184
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 131, 171, 475
TaqII GACCGA 1 cut(s) 189
TasI AATT 2 cut(s) 241, 258
TatI WGTACW 1 cut(s) 200
TfiI GAWTC 2 cut(s) 99, 433
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 497
TspDTI ATGAA 2 cut(s) 53, 332
TspGWI ACGGA 1 cut(s) 316
TspRI CASTG 1 cut(s) 232
Vha464I CTTAAG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 211
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 1 cut(s) 241
XceI RCATGY 1 cut(s) 352
XmiI GTMKAC 3 cut(s) 171, 330, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.