FvH4_3g38060

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000478
Physical Location & Seq
Reverse (-)
32542474 .. 32543699
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38060.t1

Sequence Viewer

Length: 480 bp
ATGGAGAAGGCGAAGAAGTCGCTGGAGCTAATAAGCGAGGAGGAGTCCAACCTCGTGACGCGACTCGCCGTTCCAGCTCACCGAGTCGGCTCCGGGTTCAGCTTCTACGAGGATTTCGCTCTCAAAGGAATACGGGTCGACCGGGTTGAACCCGGACTCGTCGTCTGTAGCTTCAAGGTTCCTCCCCGCCTCACCGATAGAAGTGGCAAGTTGGCAAATGGTGCAATTGCAAATCTTGTGGATGAAGTTGGTGGTGCTGTAGTTCATGTTGAGGGATTGCCTATGAGTGTTTCAGTTGACATGTCCATTTCTTTTATGTCCACCGCCAAACTTAATGATGATTTAGAGATCAGCTCAAAGGTCTTGGGAAAAAGAGGAGGTTATTCTGGAACGTTAGTGCTTATGAGAAATAAAGCAACTGGGGAGGTTATTGCAGAAGGTCGGCATTCCTTGTTCGGTAGACATCCTAGCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

160

Amino Acids

17.08

Weight (kDa)

8.73

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 70 - 122 1.3e-06 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 138, 460
AccII CGCG 1 cut(s) 61
AciI CCGC 2 cut(s) 187, 324
AclI AACGTT 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 2 cut(s) 149, 175
AhdI GACNNNNNGTC 1 cut(s) 161
AluBI AGCT 5 cut(s) 28, 77, 102, 171, 354
AluI AGCT 5 cut(s) 28, 77, 102, 171, 354
AsuC2I CCSGG 3 cut(s) 94, 143, 153
AsuHPI GGTGA 2 cut(s) 71, 184
BauI CACGAG 1 cut(s) 53
BceAI ACGGC 1 cut(s) 53
BcnI CCSGG 3 cut(s) 94, 143, 153
BfaI CTAG 1 cut(s) 468
BfmI CTRYAG 2 cut(s) 166, 258
Bme1390I CCNGG 3 cut(s) 94, 143, 153
BmeRI GACNNNNNGTC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 91, 180
BmrFI CCNGG 3 cut(s) 94, 143, 153
BmrI ACTGGG 1 cut(s) 429
BmuI ACTGGG 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 3 cut(s) 94, 143, 153
Bse1I ACTGG 1 cut(s) 424
BseGI GGATG 2 cut(s) 247, 463
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 3 cut(s) 53, 56, 390
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 3 cut(s) 93, 142, 153
BsmI GAATGC 1 cut(s) 445
Bsp143I GATC 1 cut(s) 348
BspACI CCGC 2 cut(s) 187, 324
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 91, 180
BsrI ACTGG 1 cut(s) 424
BssMI GATC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 221
BstF5I GGATG 2 cut(s) 247, 463
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 1 cut(s) 351
BstMBI GATC 1 cut(s) 348
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 74, 221
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 92, 141, 151
BstSFI CTRYAG 2 cut(s) 166, 258
BstUI CGCG 1 cut(s) 61
BtsCI GGATG 2 cut(s) 247, 463
CseI GACGC 1 cut(s) 67
CspCI CAANNNNNGTGG 2 cut(s) 219, 254
CviAII CATG 2 cut(s) 266, 301
CviJI RGCY 6 cut(s) 28, 77, 90, 102, 171, 354
CviKI_1 RGCY 6 cut(s) 28, 77, 90, 102, 171, 354
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
DriI GACNNNNNGTC 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 161
FaeI CATG 2 cut(s) 269, 304
FaiI YATR 5 cut(s) 267, 284, 302, 317, 404
FatI CATG 2 cut(s) 265, 300
FauI CCCGC 1 cut(s) 194
FblI GTMKAC 2 cut(s) 138, 460
FokI GGATG 2 cut(s) 254, 450
FspBI CTAG 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 44
HapII CCGG 3 cut(s) 93, 142, 153
HgaI GACGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 269, 304
HincII GTYRAC 2 cut(s) 139, 298
HindII GTYRAC 2 cut(s) 139, 298
HinfI GANTC 4 cut(s) 44, 63, 84, 156
HpaII CCGG 3 cut(s) 93, 142, 153
HphI GGTGA 2 cut(s) 71, 184
Hpy166II GTNNAC 4 cut(s) 139, 298, 321, 461
Hpy188III TCNNGA 2 cut(s) 55, 387
Hpy8I GTNNAC 4 cut(s) 139, 298, 321, 461
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 3 cut(s) 224, 230, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 221
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 2 cut(s) 269, 304
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 25, 95
LpnPI CCDG 7 cut(s) 8, 87, 106, 155, 166, 372, 405
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 225
MluCI AATT 1 cut(s) 225
MlyI GAGTC 4 cut(s) 53, 57, 93, 150
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 1 cut(s) 333
MspI CCGG 3 cut(s) 93, 142, 153
MspR9I CCNGG 3 cut(s) 94, 143, 153
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 445
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 74, 221
NciI CCSGG 3 cut(s) 94, 143, 153
NdeII GATC 1 cut(s) 348
NlaIII CATG 2 cut(s) 269, 304
NlaIV GGNNCC 2 cut(s) 91, 180
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 304
PciI ACATGT 1 cut(s) 300
PctI GAATGC 1 cut(s) 445
PleI GAGTC 4 cut(s) 52, 57, 92, 150
PpsI GAGTC 4 cut(s) 52, 57, 92, 150
PscI ACATGT 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 91, 180
SalI GTCGAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 333
Sau3AI GATC 1 cut(s) 348
SchI GAGTC 4 cut(s) 53, 57, 93, 150
ScrFI CCNGG 3 cut(s) 94, 143, 153
SfcI CTRYAG 2 cut(s) 166, 258
Sse9I AATT 1 cut(s) 225
SsiI CCGC 2 cut(s) 187, 324
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 3 cut(s) 92, 141, 151
TaiI ACGT 1 cut(s) 395
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 225
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 254, 258
XceI RCATGY 1 cut(s) 304
XmiI GTMKAC 2 cut(s) 138, 460
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.