FvH4_3g37970

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000478
Physical Location & Seq
Reverse (-)
32512458 .. 32514388
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37970.t1

Sequence Viewer

Length: 318 bp
ATGGAGAAGAAGGTGAAGGACTTTCTGGAGGTGAGCCGGTACGAGTCAGAGGCCGTCTCACAAATCGTGGTTCCACCCCAGGAACCAGGCAACTCGAGCTTCTACGAGGATTTCGCCCGAAGCGGCCTCCGAGTCGACCGAGTCGGACCCCATGGACTCCTCGTCTGCACTCTCAAGGTTCCTCACCGCCTCACCGATAGAGCTGGAAATTTGGCAAAAGGAGCAATTGCAAATCTTGTTGATGTGGTTGGTGGTTGTGTGATATATGTTCAGGGCAAAATGAAGCTTCACACAGATGTAAATCAGTGTGAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

106

Amino Acids

11.54

Weight (kDa)

6.82

Isoelectric Point (pI)

28.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AciI CCGC 2 cut(s) 123, 187
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 1 cut(s) 41
AhdI GACNNNNNGTC 1 cut(s) 161
AjnI CCWGG 2 cut(s) 78, 85
AluBI AGCT 3 cut(s) 99, 203, 286
AluI AGCT 3 cut(s) 99, 203, 286
Alw26I GTCTC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 2 cut(s) 51, 124
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 4 cut(s) 25, 43, 176, 184
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 80, 87
BcoDI GTCTC 1 cut(s) 61
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 2 cut(s) 80, 87
Bme18I GGWCC 1 cut(s) 146
BmeRI GACNNNNNGTC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 4 cut(s) 72, 84, 148, 180
BmrFI CCNGG 2 cut(s) 80, 87
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 78, 151
Bse118I RCCGGY 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 2 cut(s) 80, 87
BseDI CCNNGG 2 cut(s) 78, 151
BseJI GATNNNNATC 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 53, 126
BsiEI CGRYCG 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsnI GGCC 2 cut(s) 53, 126
BsoBI CYCGRG 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 2 cut(s) 123, 187
BspANI GGCC 2 cut(s) 53, 126
BspLI GGNNCC 4 cut(s) 72, 84, 148, 180
BsrFI RCCGGY 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 78, 151
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 80, 87
BstDSI CCRYGG 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 61
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 96, 221
BstNI CCWGG 2 cut(s) 80, 87
BstSCI CCNGG 2 cut(s) 78, 85
BsuRI GGCC 2 cut(s) 53, 126
BtgI CCRYGG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 152
CviJI RGCY 6 cut(s) 36, 53, 99, 126, 203, 286
CviKI_1 RGCY 6 cut(s) 36, 53, 99, 126, 203, 286
CviQI GTAC 1 cut(s) 40
DriI GACNNNNNGTC 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 78, 85
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 1 cut(s) 155
FaiI YATR 4 cut(s) 153, 265, 267, 316
FatI CATG 1 cut(s) 151
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 53, 126
HapII CCGG 1 cut(s) 37
Hin1II CATG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 4 cut(s) 44, 132, 141, 156
HpaII CCGG 1 cut(s) 37
HphI GGTGA 4 cut(s) 25, 43, 176, 184
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 49, 131, 146
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 4, 10
HpyCH4V TGCA 2 cut(s) 168, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 221
Hsp92II CATG 1 cut(s) 155
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 8 cut(s) 11, 50, 65, 72, 92, 99, 189, 257
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 1 cut(s) 225
MluCI AATT 2 cut(s) 208, 225
MlyI GAGTC 4 cut(s) 53, 141, 150, 150
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 7 cut(s) 22, 43, 100, 137, 170, 192, 200
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 80, 87
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 2 cut(s) 80, 87
MwoI GCNNNNNNNGC 2 cut(s) 96, 221
NcoI CCATGG 1 cut(s) 151
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 4 cut(s) 72, 84, 148, 180
PaeR7I CTCGAG 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 4 cut(s) 52, 140, 149, 150
PpsI GAGTC 4 cut(s) 52, 140, 149, 150
Psp6I CCWGG 2 cut(s) 78, 85
PspGI CCWGG 2 cut(s) 78, 85
PspN4I GGNNCC 4 cut(s) 72, 84, 148, 180
PspPI GGNCC 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 294
SalI GTCGAC 1 cut(s) 134
SatI GCNGC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 4 cut(s) 53, 141, 150, 150
ScrFI CCNGG 2 cut(s) 80, 87
SetI ASST 6 cut(s) 15, 33, 101, 180, 205, 288
Sfr274I CTCGAG 1 cut(s) 94
SinI GGWCC 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 2 cut(s) 94, 173
SmoI CTYRAG 2 cut(s) 94, 173
Sse9I AATT 2 cut(s) 208, 225
SsiI CCGC 2 cut(s) 123, 187
StyD4I CCNGG 2 cut(s) 78, 85
StyI CCWWGG 1 cut(s) 151
TaqI TCGA 2 cut(s) 95, 135
TaqII GACCGA 1 cut(s) 153
TasI AATT 2 cut(s) 208, 225
TauI GCSGC 1 cut(s) 126
TscAI CASTG 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 296
TspRI CASTG 1 cut(s) 311
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 208
XhoI CTCGAG 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.