Rh5BG465900

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000478
Physical Location & Seq
Reverse (-)
74255013 .. 74267919
12907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG465900.1

Sequence Viewer

Length: 462 bp
ATGGTGGTTGATCAACGGCGGTGGCGGTTGGTTGGCTGGCCTTCTCGAGAAGAAGAAGAACGTGATAAAGTCAACATTGAGAACGAGGCAAAGAAGTTTTTGGAGCAGAGCGAGCAAGAGTCGGAGACTGTGTCGGGACTGGCCTTACCAGAATTCCGGCTCGGTGAGGCAACCATCTATGATCGTTTGGCTCCAAGAGGCATCAGAGTCGACCGAGTCGAACCGGGGCTGGTTGTGTGTACTTTCAAGGTCCCTCTACGACTCCTTGATAGAGATGGAAATTTTGCAAGTGGTGCAATTGCCAACCTGGTTGATGTAGTTGGTAGTTGCGTGGTTTATGTTTCCGGTGCACCTGTGAATGTCACGATGGAGATGTCCATATCGTATTTGTCTACGGCAAAGCTTGATGATGAGTTAGAGATAACTTCAAGGGCTATTGTGATTCCACAACCGGAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

153

Amino Acids

17.12

Weight (kDa)

4.69

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 210, 392
AciI CCGC 2 cut(s) 19, 25
AcsI RAATTY 2 cut(s) 152, 280
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 2 cut(s) 247, 429
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 2 cut(s) 38, 141
ApaLI GTGCAC 1 cut(s) 348
ApoI RAATTY 2 cut(s) 152, 280
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 352
BccI CCATC 3 cut(s) 182, 269, 361
BceAI ACGGC 2 cut(s) 32, 411
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 1 cut(s) 308
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 225, 308
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 192, 252
BmrFI CCNGG 2 cut(s) 225, 308
BmsI GCATC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 2 cut(s) 344, 451
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse1I ACTGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 352
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 40, 143
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 4 cut(s) 157, 224, 345, 452
BslFI GGGAC 2 cut(s) 150, 236
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 150, 236
BsnI GGCC 2 cut(s) 40, 143
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 2 cut(s) 10, 181
BspACI CCGC 2 cut(s) 19, 25
BspANI GGCC 2 cut(s) 40, 143
BspLI GGNNCC 2 cut(s) 192, 252
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 2 cut(s) 10, 181
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 130, 459
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 38, 113
BstKTI GATC 2 cut(s) 13, 184
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 10, 181
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 112, 293
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 223, 306
BstSLI GKGCMC 1 cut(s) 352
BsuRI GGCC 2 cut(s) 40, 143
Cac8I GCNNGC 2 cut(s) 38, 113
Cfr13I GGNCC 1 cut(s) 250
CsiI ACCWGGT 1 cut(s) 306
Csp6I GTAC 1 cut(s) 240
CspCI CAANNNNNGTGG 1 cut(s) 37
CviJI RGCY 8 cut(s) 36, 40, 143, 160, 191, 229, 403, 434
CviKI_1 RGCY 8 cut(s) 36, 40, 143, 160, 191, 229, 403, 434
CviQI GTAC 1 cut(s) 240
DpnI GATC 2 cut(s) 12, 183
DpnII GATC 2 cut(s) 10, 181
Eco47I GGWCC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 306
FaiI YATR 3 cut(s) 180, 339, 380
FaqI GGGAC 2 cut(s) 150, 236
FbaI TGATCA 1 cut(s) 10
FblI GTMKAC 2 cut(s) 210, 392
HaeIII GGCC 2 cut(s) 40, 143
HapII CCGG 4 cut(s) 157, 224, 345, 452
HincII GTYRAC 2 cut(s) 73, 211
HindII GTYRAC 2 cut(s) 73, 211
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 5 cut(s) 119, 207, 216, 261, 442
HpaII CCGG 4 cut(s) 157, 224, 345, 452
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 5 cut(s) 73, 211, 240, 350, 393
Hpy188I TCNGA 2 cut(s) 124, 206
Hpy188III TCNNGA 4 cut(s) 45, 47, 135, 364
Hpy8I GTNNAC 5 cut(s) 73, 211, 240, 350, 393
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 2 cut(s) 130, 459
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 287, 296, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 293
HpySE526I ACGT 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 2 cut(s) 10, 181
LmnI GCTCC 2 cut(s) 103, 196
LweI GCATC 1 cut(s) 210
MabI ACCWGGT 1 cut(s) 306
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 361
MalI GATC 2 cut(s) 12, 183
MboI GATC 2 cut(s) 10, 181
MboII GAAGA 3 cut(s) 62, 65, 68
MfeI CAATTG 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 3 cut(s) 152, 280, 297
MlyI GAGTC 4 cut(s) 128, 216, 225, 255
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 4 cut(s) 79, 160, 191, 264
MspI CCGG 4 cut(s) 157, 224, 345, 452
MspR9I CCNGG 2 cut(s) 225, 308
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 112, 293
NciI CCSGG 1 cut(s) 225
NdeII GATC 2 cut(s) 10, 181
NlaIV GGNNCC 2 cut(s) 192, 252
NmuCI GTSAC 1 cut(s) 361
PaeR7I CTCGAG 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 1 cut(s) 442
PflFI GACNNNGTC 2 cut(s) 130, 215
PleI GAGTC 4 cut(s) 127, 215, 224, 255
PpsI GAGTC 4 cut(s) 127, 215, 224, 255
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 192, 252
PspPI GGNCC 1 cut(s) 250
PspPPI RGGWCCY 1 cut(s) 250
PsyI GACNNNGTC 2 cut(s) 130, 215
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SalI GTCGAC 1 cut(s) 209
Sau3AI GATC 2 cut(s) 10, 181
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 4 cut(s) 128, 216, 225, 255
ScrFI CCNGG 2 cut(s) 225, 308
SduI GDGCHC 1 cut(s) 352
SetI ASST 5 cut(s) 64, 252, 309, 355, 405
SexAI ACCWGGT 1 cut(s) 306
SfaNI GCATC 1 cut(s) 210
Sfr274I CTCGAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 3 cut(s) 152, 280, 297
SsiI CCGC 2 cut(s) 19, 25
StyD4I CCNGG 2 cut(s) 223, 306
TaaI ACNGT 2 cut(s) 130, 459
TaiI ACGT 1 cut(s) 64
TaqI TCGA 3 cut(s) 46, 210, 219
TaqII GACCGA 1 cut(s) 228
TasI AATT 3 cut(s) 152, 280, 297
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 1 cut(s) 442
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
Tth111I GACNNNGTC 2 cut(s) 130, 215
VneI GTGCAC 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 2 cut(s) 152, 280
XhoI CTCGAG 1 cut(s) 45
XmiI GTMKAC 2 cut(s) 210, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.